HHsearch alignment for GI: 254780615 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.07 E-value=0.016 Score=35.34 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=16.8
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 003675666624899999998
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n 172 (478)
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~ 73 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANE 73 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 788789999888999999984