>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.

Probab=98.74 E-value=1.9e-07 Score=67.81 Aligned_cols=198 Identities=17% Similarity=0.149 Sum_probs=106.7 Q ss_pred CCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 0023110023557--02154100367566662489999999885057885268762164345999999854244200122 Q gi|254780615|r 133 LTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPR 210 (478) Q Consensus 133 L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~ 210 (478) T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~---~g~~~~-- 75 (231) T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKS---FGWDLE-- 75 (231) T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH---CCCCHH-- T ss_conf 988955688631699829969999858972599999999999998658968999813799999999998---299858-- Q ss_pred CCCCCCCCCEEEEEEECCCCCHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHC Q ss_conf 23444332316999717668967----87777777877689998669967999715599987601245531144101101 Q gi|254780615|r 211 KNNGSAVGSKCSLLYGQMNEPPG----ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGY 286 (478) Q Consensus 211 ~~~~~~~~~~tv~v~~~~~~~~~----~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gY 286 (478) T Consensus 76 ~~~~~g---~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~---------~---- 138 (231) T pfam06745 76 KLEEEG---KLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKP---------A---- 138 (231) T ss_pred HHHHCC---CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCH---------H---- T ss_conf 986469---6789862544222100112279999999999999971998-8999764164005889---------9---- Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCC Q ss_conf 22356665788876317776532566654304766441058999975034256411566318867532235 Q gi|254780615|r 287 QSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLD 357 (478) Q Consensus 287 p~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~ 357 (478) T Consensus 139 --~~r~~l~~l~~~l---k~~g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K 204 (231) T pfam06745 139 --MAREILRRLKRVL---KKLGVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEIVK 204 (231) T ss_pred --HHHHHHHHHHHHH---HHCCCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEEE T ss_conf --9999999999999---97699199998212577765676301110036999998824998999999998

HHsearch alignment for GI: 254780615 and conserved domain: pfam06745