RPSBLAST alignment for GI: 254780615 and conserved domain: TIGR01039

>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. Length = 461
 Score =  783 bits (2024), Expect = 0.0
 Identities = 328/471 (69%), Positives = 387/471 (82%), Gaps = 15/471 (3%)

Query: 9   SVGRIQQIMGAVVDVVFVNS-LPPIFSSLETS-DKGSRIVFEVVQHLGEKTVRCIAMSRT 66
           + G++ Q++G VVDV F    LP I+++L+      S +  EV QHLG+ TVR IAM  T
Sbjct: 1   TKGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGST 60

Query: 67  DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126
           DGL RG  VIDTG  I+VPVG+ TLGRI NV+GEP+D++G I + E+  IH+ +PS+ EQ
Sbjct: 61  DGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQ 120

Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
           ST   IL TGIKVIDL++PY KGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFAGV
Sbjct: 121 STKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGV 180

Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246
           GERTREGNDLYHEM +S V ID           K +L+YGQMNEPPGAR RVALTGLT+A
Sbjct: 181 GERTREGNDLYHEMKESGV-ID-----------KTALVYGQMNEPPGARMRVALTGLTMA 228

Query: 247 EHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305
           E+FRD QGQDVL F+DNIFRFTQA SE+SALLGR+PSAVGYQ TLA EMGELQERIT+T 
Sbjct: 229 EYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTK 288

Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365
            GSITSVQA+YVPADDLTDPAPAT+F HLDATTVLSR+I+E GIYPA+DPLDS S +L+ 
Sbjct: 289 TGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDP 348

Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHV 425
            +VG+EHYDVAR VQ+ILQRYK LQDIIAILGMDELSEEDKL V RAR+++RF+SQPF V
Sbjct: 349 SVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFV 408

Query: 426 AESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAE 476
           AE FTG PGK+V L++TIRGFK +++G+YDHLPE AFYMVG+I+E V+KA+
Sbjct: 409 AEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFYMVGTIEEVVEKAK 459