RPSBLAST alignment for GI: 254780615 and conserved domain: TIGR03324

>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase. Length = 497

 Score =  106 bits (265), Expect = 2e-23
 Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 37/314 (11%)

Query: 55  EKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKR 114
           E  V  + +     L  GD V  TG  + VPVG+  LGR+++ +G P+D  G + SS + 
Sbjct: 68  EDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRL 127

Query: 115 AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174
            I +P+P   +++     L TG+KVID + P  +G +  + G    GKT + ++ I N  
Sbjct: 128 PIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILN-Q 186

Query: 175 KAHGGYSVFAGVGERT----------REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLL 224
           K      ++  +G+R           RE   + + ++                      +
Sbjct: 187 KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIV----------------------V 224

Query: 225 YGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAV 284
             + N+PPG +        ++ EHF +QG+DVL   D++ +  +A  E+S LL R P   
Sbjct: 225 VTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGRE 284

Query: 285 GYQSTLALEMGELQERITTTLK----GSITSVQAIYVPADDLTDPAPATSFTHLDATTVL 340
            +   +      L ER T   +    GS+T++  I   A +++   P    +  D    L
Sbjct: 285 AFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYL 344

Query: 341 SRQISEKGIYPAID 354
           S  + E G+ PA+D
Sbjct: 345 SPTLFELGVLPAVD 358