RPSBLAST alignment for GI: 254780615 and conserved domain: TIGR00962

>gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. Length = 501
 Score =  104 bits (261), Expect = 6e-23
 Identities = 113/438 (25%), Positives = 181/438 (41%), Gaps = 64/438 (14%)

Query: 49  VVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAI 108
           +  +L E +V  + M     +  G  V  TG  + VPVG+  LGR++N +G+P+D +G I
Sbjct: 61  IALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPI 120

Query: 109 ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIME 168
            S E R I + +P   E+ +    L TGIK ID + P  +G +  + G    GKT + ++
Sbjct: 121 DSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAID 180

Query: 169 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLL--YG 226
            I N  K    Y V+  +G++                         S V      L  +G
Sbjct: 181 TIIN-QKDSDVYCVYVAIGQK------------------------ASTVAQVVRKLEEHG 215

Query: 227 QM----------NEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276
            M          ++    +     TG T+AE+FRD G+  L   D++ +   A  +IS L
Sbjct: 216 AMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLL 275

Query: 277 LGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYVPADDLTDPAPATSFT 332
           L R P    Y   +      L ER          GS+T++  I   A D++   P    +
Sbjct: 276 LRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVIS 335

Query: 333 HLDATTVLSRQISEKGIYPAIDPLDSNS---SMLEIDIVGQEHYDVARRVQEILQRYKSL 389
             D    L   +   GI PAI+   S S      +I  + Q    VA  ++  L +Y+ L
Sbjct: 336 ITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQ----VAGSLRLELAQYREL 391

Query: 390 QDIIAILGMDELSEEDKLVVARARKLERFMSQ----PFHVAE----SFTGLPG--KFVSL 439
            +  +    D L E  K  + R ++L   + Q    P  V E     + G  G    + +
Sbjct: 392 -EAFSQFASD-LDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPV 449

Query: 440 EETIRGFKGLVQGEYDHL 457
           ++ +R F+   Q   D+L
Sbjct: 450 DK-VRKFE---QELLDYL 463