RPSBLAST alignment for GI: 254780615 and conserved domain: PRK12608

>gnl|CDD|183622 PRK12608, PRK12608, transcription termination factor Rho; Provisional. Length = 380
 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 72/313 (23%), Positives = 119/313 (38%), Gaps = 61/313 (19%)

Query: 65  RTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYT 124
           R   L  GD V               L R+ +V G   +         +      +P + 
Sbjct: 55  RRFNLRTGDVV---EGVARPRERYRVLVRVDSVNGTDPEKLAR-----RPHFDDLTPLHP 106

Query: 125 EQ----STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180
            +     T +  L+   +V+DL++P  KG +  +      GKTVL+ ++   VA  H   
Sbjct: 107 RERLRLETGSDDLSM--RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEV 164

Query: 181 SVFAG-VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239
            +    + ER  E  D+             R   G    S         + PP    RVA
Sbjct: 165 HLMVLLIDERPEEVTDM------------RRSVKGEVYAS-------TFDRPPDEHIRVA 205

Query: 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQA-NSEISALLGRIPSAVGYQSTLALEMGELQ 298
              L  A+   +QG+DV+  +D++ R  +A N+E+ +  GR  S  G     AL+     
Sbjct: 206 ELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVES-SGRTLS--GGVDARALQR---P 259

Query: 299 ERITTTLK-----GSITSVQAIYVP----ADDLTDPAPATSFTHLDAT----TVLSRQIS 345
           +R+    +     GS+T +    V      D++        F     T     VL R+++
Sbjct: 260 KRLFGAARNIEEGGSLTIIATALVDTGSRMDEVI-------FEEFKGTGNMEIVLDRELA 312

Query: 346 EKGIYPAIDPLDS 358
           +K ++PAID   S
Sbjct: 313 DKRVFPAIDIAKS 325