RPSBLAST alignment for GI: 254780615 and conserved domain: PRK12608
>gnl|CDD|183622 PRK12608, PRK12608, transcription termination factor Rho; Provisional. Length = 380
Score = 44.7 bits (106), Expect = 6e-05
Identities = 72/313 (23%), Positives = 119/313 (38%), Gaps = 61/313 (19%)
Query: 65 RTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYT 124
R L GD V L R+ +V G + + +P +
Sbjct: 55 RRFNLRTGDVV---EGVARPRERYRVLVRVDSVNGTDPEKLAR-----RPHFDDLTPLHP 106
Query: 125 EQ----STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180
+ T + L+ +V+DL++P KG + + GKTVL+ ++ VA H
Sbjct: 107 RERLRLETGSDDLSM--RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEV 164
Query: 181 SVFAG-VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239
+ + ER E D+ R G S + PP RVA
Sbjct: 165 HLMVLLIDERPEEVTDM------------RRSVKGEVYAS-------TFDRPPDEHIRVA 205
Query: 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQA-NSEISALLGRIPSAVGYQSTLALEMGELQ 298
L A+ +QG+DV+ +D++ R +A N+E+ + GR S G AL+
Sbjct: 206 ELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVES-SGRTLS--GGVDARALQR---P 259
Query: 299 ERITTTLK-----GSITSVQAIYVP----ADDLTDPAPATSFTHLDAT----TVLSRQIS 345
+R+ + GS+T + V D++ F T VL R+++
Sbjct: 260 KRLFGAARNIEEGGSLTIIATALVDTGSRMDEVI-------FEEFKGTGNMEIVLDRELA 312
Query: 346 EKGIYPAIDPLDS 358
+K ++PAID S
Sbjct: 313 DKRVFPAIDIAKS 325