RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta
[Candidatus Liberibacter asiaticus str. psy62]
(478 letters)
>gnl|CDD|181752 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 920 bits (2380), Expect = 0.0
Identities = 332/472 (70%), Positives = 391/472 (82%), Gaps = 15/472 (3%)
Query: 8 ESVGRIQQIMGAVVDVVF-VNSLPPIFSSLETSD-KGSRIVFEVVQHLGEKTVRCIAMSR 65
+ G+I Q++G VVDV F LP I+++LE G ++V EV QHLG+ VR IAM
Sbjct: 1 MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGS 60
Query: 66 TDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTE 125
TDGL RG VIDTG I+VPVG+ATLGRI NV+GEP+D++G I + E+ IH+ +PS+ E
Sbjct: 61 TDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEE 120
Query: 126 QSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185
ST IL TGIKVIDL++PY KGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFAG
Sbjct: 121 LSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG 180
Query: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245
VGERTREGNDLYHEM +S V +D K +L++GQMNEPPGAR RVALTGLT+
Sbjct: 181 VGERTREGNDLYHEMKESGV-LD-----------KTALVFGQMNEPPGARLRVALTGLTM 228
Query: 246 AEHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT 304
AE+FRD +GQDVL F+DNIFRFTQA SE+SALLGR+PSAVGYQ TLA EMG+LQERIT+T
Sbjct: 229 AEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST 288
Query: 305 LKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLE 364
KGSITSVQA+YVPADDLTDPAPAT+F HLDATTVLSRQI+E GIYPA+DPLDS S +L+
Sbjct: 289 KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILD 348
Query: 365 IDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFH 424
IVG+EHYDVAR VQ+ILQRYK LQDIIAILGMDELSEEDKL VARARK++RF+SQPF
Sbjct: 349 PLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFF 408
Query: 425 VAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAE 476
VAE FTG PGK+V L++TIRGFK +++GEYDHLPE AFYMVG+I+EA++KA+
Sbjct: 409 VAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAK 460
>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit.
Length = 461
Score = 783 bits (2024), Expect = 0.0
Identities = 328/471 (69%), Positives = 387/471 (82%), Gaps = 15/471 (3%)
Query: 9 SVGRIQQIMGAVVDVVFVNS-LPPIFSSLETS-DKGSRIVFEVVQHLGEKTVRCIAMSRT 66
+ G++ Q++G VVDV F LP I+++L+ S + EV QHLG+ TVR IAM T
Sbjct: 1 TKGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGST 60
Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126
DGL RG VIDTG I+VPVG+ TLGRI NV+GEP+D++G I + E+ IH+ +PS+ EQ
Sbjct: 61 DGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQ 120
Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
ST IL TGIKVIDL++PY KGGKIGLFGGAGVGKTVLI ELINN+AK HGGYSVFAGV
Sbjct: 121 STKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGV 180
Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246
GERTREGNDLYHEM +S V ID K +L+YGQMNEPPGAR RVALTGLT+A
Sbjct: 181 GERTREGNDLYHEMKESGV-ID-----------KTALVYGQMNEPPGARMRVALTGLTMA 228
Query: 247 EHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305
E+FRD QGQDVL F+DNIFRFTQA SE+SALLGR+PSAVGYQ TLA EMGELQERIT+T
Sbjct: 229 EYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTK 288
Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365
GSITSVQA+YVPADDLTDPAPAT+F HLDATTVLSR+I+E GIYPA+DPLDS S +L+
Sbjct: 289 TGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDP 348
Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHV 425
+VG+EHYDVAR VQ+ILQRYK LQDIIAILGMDELSEEDKL V RAR+++RF+SQPF V
Sbjct: 349 SVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFV 408
Query: 426 AESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAE 476
AE FTG PGK+V L++TIRGFK +++G+YDHLPE AFYMVG+I+E V+KA+
Sbjct: 409 AEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFYMVGTIEEVVEKAK 459
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 704 bits (1820), Expect = 0.0
Identities = 276/471 (58%), Positives = 341/471 (72%), Gaps = 14/471 (2%)
Query: 8 ESVGRIQQIMGAVVDVVF-VNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRT 66
+GRI +I G VVDV F +LPPI +L D G + EV QHL E TVR IA+ T
Sbjct: 1 MMIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGST 60
Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126
GL+RGD V +TG I VPVGEA LGR+++V+GEP+D + + E+R IH P EQ
Sbjct: 61 SGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQ 120
Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
T IL TGIKVIDL+ P KGGK GLFGGAGVGKTVL+MELI N++K H G SVFAGV
Sbjct: 121 DTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGV 180
Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246
GER+REG++LYHEM +S V K ++YGQMNEPPGAR RV LTGLT+A
Sbjct: 181 GERSREGHELYHEMKESGVL------------DKTVMVYGQMNEPPGARMRVVLTGLTIA 228
Query: 247 EHFRD-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305
E+ RD + +DVL F+DNIFRF QA SE+S LLGR+PS VGYQ TLA E+ ELQERI +T
Sbjct: 229 EYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTK 288
Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365
GSITS+QA+YVPADDLTDPA F+HLD+T VLSR + KGIYPAIDPL S+S++L+
Sbjct: 289 NGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDP 348
Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHV 425
+VG+ HYD A V+ ILQRYK L+D+IAILG+DELS EDK++V RAR+L+RF++QPF V
Sbjct: 349 LVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVKRARQLQRFLTQPFFV 408
Query: 426 AESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKAE 476
E+FTG PG V LEET+ + ++ GEYD E +FYM+GS+D+ K E
Sbjct: 409 TEAFTGEPGVSVPLEETLDSCERILNGEYDDWSEESFYMIGSLDDLRTKEE 459
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 527 bits (1360), Expect = e-150
Identities = 230/462 (49%), Positives = 313/462 (67%), Gaps = 14/462 (3%)
Query: 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLS 70
G + + G++VDV F LP I S L +G +V EV+ L VR IA++ T GL+
Sbjct: 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREG-EVVVEVLSQLDAHHVRGIALTPTQGLA 59
Query: 71 RGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDA 130
RG V D+G + PVG+ TL R+ +V G +D + E R++HQ P+ T +S+ +
Sbjct: 60 RGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119
Query: 131 SILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190
+ TGIK ID++ P ++GGK GLFGGAGVGKTVL+ E+I+N+ H G S+F G+GER
Sbjct: 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERC 179
Query: 191 REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250
REG +LY EM ++ V N +++GQMNEPPGAR RV T LT+AE+FR
Sbjct: 180 REGEELYREMKEAGV----LDNT--------VMVFGQMNEPPGARFRVGHTALTMAEYFR 227
Query: 251 D-QGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSI 309
D + QDVL +DNIFRF QA SE+S LLG++PS +GYQ TL E+ EL+ERI TT G+I
Sbjct: 228 DDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDGAI 287
Query: 310 TSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVG 369
TS+QA+YVPADD TDPA +F+HL A+ VLSR+ + +G+YPAIDPL S S M IVG
Sbjct: 288 TSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVG 347
Query: 370 QEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHVAESF 429
+ HYD+AR V++ L +Y+ L+DIIA+LG+++LS ED+ VV RAR+LERF++QPF E F
Sbjct: 348 ERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQPFFTTEQF 407
Query: 430 TGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEA 471
TG+ GK VSLE+ + G + ++ E+ PE YM+G IDEA
Sbjct: 408 TGMKGKTVSLEDALDGCERILNDEFQDYPERDLYMIGKIDEA 449
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 211 bits (539), Expect = 3e-55
Identities = 134/434 (30%), Positives = 220/434 (50%), Gaps = 33/434 (7%)
Query: 10 VGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGS--RIVFEVVQHLGEKTVRCIAMSRTD 67
VGR+ ++ G +++ V + +GS R+V EVV GE V + +
Sbjct: 24 VGRVTKVKGLLIEAVGPQ--ASVGDLCLIERRGSEGRLVAEVVGFNGEF-VFLMPYEEVE 80
Query: 68 GLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIIS-SEKRAIHQPSPSYTEQ 126
G+ G V+ TG +++ VG+ LGR+++ +G+P+D +G + E + + ++
Sbjct: 81 GVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKR 140
Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
+ IL+TG++ ID + KG +IG+F G+GVGK+ L + +I +A +V A +
Sbjct: 141 APIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTL-LGMIARNTEAD--VNVIALI 197
Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246
GER RE E I+ + + K + ++ ++ P R + A +A
Sbjct: 198 GERGREVR----EFIEHDLGEEGLK--------RSVVVVATSDQSPLLRLKGAYVATAIA 245
Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK 306
E+FRDQG+DVL +D++ RF A EI G P+ GY ++ + L ER + K
Sbjct: 246 EYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGK 305
Query: 307 GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEID 366
GSIT+ + V DD+ +P + LD VLSR ++++G YPAID L S S ++
Sbjct: 306 GSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMT-A 364
Query: 367 IVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMSQ- 421
IV +EH AR+ +E+L +YK +D+I I G D + +A+ KLERF+ Q
Sbjct: 365 IVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDF---AIAKYPKLERFLKQG 421
Query: 422 ---PFHVAESFTGL 432
+ ES L
Sbjct: 422 INEKVNFEESLQQL 435
>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 413
Score = 208 bits (532), Expect = 2e-54
Identities = 123/389 (31%), Positives = 200/389 (51%), Gaps = 26/389 (6%)
Query: 11 GRIQQIMGAVVDV----VFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRT 66
G++ +++G ++ + L I + G ++ EVV E + + +
Sbjct: 1 GKVTRVIGLTIESKGPKAKIGELCSILTK-----GGKPVLAEVVGFKEENVL-LMPLGEV 54
Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126
+G+ G VI TG + + VG+ LGR+++ +G P+D +G II E + P P+ ++
Sbjct: 55 EGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKR 114
Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
L TGIK ID + KG ++G+F G+GVGK+ L + +I AKA +V A +
Sbjct: 115 PRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIARNAKA--DINVIALI 171
Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246
GER RE D K+ G + ++ ++P R + A T +A
Sbjct: 172 GERGREVRDFI------------EKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIA 219
Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK 306
E+FRDQG+DVL +D++ RF A EI +G P+ GY ++ + +L ER + K
Sbjct: 220 EYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQK 279
Query: 307 GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEID 366
GSIT + V DD+ +P LD VLSR+++ K YPAID L S S ++ +
Sbjct: 280 GSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMN-E 338
Query: 367 IVGQEHYDVARRVQEILQRYKSLQDIIAI 395
IV +EH ++A +++E+L YK +D+I I
Sbjct: 339 IVSEEHKELAGKLRELLAVYKEAEDLINI 367
>gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 411
Score = 204 bits (521), Expect = 6e-53
Identities = 131/429 (30%), Positives = 220/429 (51%), Gaps = 33/429 (7%)
Query: 11 GRIQQIMGAVVDVVFVNSLPPIFS--SLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDG 68
GR+ +++G V++ V + P+ S +E+SD G I EVV G++ + + + +G
Sbjct: 1 GRVTRVVGLVLEAVGLR--APVGSRCEIESSD-GDPIEAEVVGFRGDRVL-LMPLEDVEG 56
Query: 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQST 128
L G V + +PVG++ LGR+++ +G P+D +G + + E+ ++ P + +++
Sbjct: 57 LRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAP 116
Query: 129 DASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188
L G++ I+ + +G ++G+F G+GVGK+ L + ++ +A V +GE
Sbjct: 117 IDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTL-LGMMARYTEAD--VVVVGLIGE 173
Query: 189 RTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEH 248
R RE E I+ G ++ ++ +E P R R A +AE+
Sbjct: 174 RGRE----VKEFIE--------DILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEY 221
Query: 249 FRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQ-STLALEMGELQER--ITTTL 305
FRDQG+DVL +D++ RF A EI+ +G P+ GY S A + +L ER
Sbjct: 222 FRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAK-LPQLVERAGNGEEG 280
Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365
KGSIT+ + V DD DP + LD VLSR+++E+G YPAID L S S +
Sbjct: 281 KGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILAS-ISRVMP 339
Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMSQ 421
D+V EH ARR +++L RY+ +D+I+I G D ++ +A ++E F+ Q
Sbjct: 340 DVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQ---AIALYPRIEAFLQQ 396
Query: 422 PFHVAESFT 430
SF
Sbjct: 397 GMRERASFE 405
>gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase.
Length = 422
Score = 194 bits (496), Expect = 3e-50
Identities = 128/450 (28%), Positives = 209/450 (46%), Gaps = 37/450 (8%)
Query: 7 TESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRT 66
GR+ ++ G ++ V + + D + EVV G++ + +
Sbjct: 3 VRVRGRVTEVSGTLLKAVLPGARVGELCLIRRRDPSQLLA-EVVGFTGDEAL-LSPLGEL 60
Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAI--ISSEKRAIHQPSPSYT 124
G+S G VI TG +++ VGEA LGR+++ G P+D +G + E R + P
Sbjct: 61 HGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPM 120
Query: 125 EQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
+ L TG++ ID + +G +IG+F GAGVGK+ L+ + A A +V A
Sbjct: 121 SRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARG-ASAD--VNVIA 177
Query: 185 GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLT 244
+GER RE E I+ + + RK + L+ + P R + A T
Sbjct: 178 LIGERGREVR----EFIEHHLGEEGRK--------RSVLVVSTSDRPSLERLKAAYTATA 225
Query: 245 VAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT 304
+AE+FRDQG+ VL +D++ RF +A EI G P+ GY ++ + L ER
Sbjct: 226 IAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNG 285
Query: 305 LKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLE 364
KGSIT++ + V DD+ DP + LD VLSR ++E+ YPAID L S S ++
Sbjct: 286 EKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMS 345
Query: 365 IDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMS 420
+V EH A +++ +L YK ++ +I + G D +++ + + + F+
Sbjct: 346 -QVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDD---AIDKIDAIRAFLR 401
Query: 421 QPFHVAESFTGLPGKFVSLEETIRGFKGLV 450
Q + EET+ LV
Sbjct: 402 QSTDEYSPY----------EETLEQLHALV 421
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 191 bits (487), Expect = 4e-49
Identities = 119/403 (29%), Positives = 187/403 (46%), Gaps = 27/403 (6%)
Query: 39 SDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVI 98
+ G ++ EVV V + +G+ G V + V + LGR++N +
Sbjct: 30 ARDGRPVLAEVVG-FNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINAL 88
Query: 99 GEPVDDQGAIISSEKR-AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGG 157
GEP+D +G + E+R + P ++ L TG++VID P +G ++G+F G
Sbjct: 89 GEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAG 148
Query: 158 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND-LYHEMIDSKVNIDPRKNNGSA 216
+GVGK+ L+ L N V A VGER RE + L ++ G
Sbjct: 149 SGVGKSTLLSMLARN---TDADVVVIALVGERGREVREFLEDDL-------------GEE 192
Query: 217 VGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276
+ ++ +E P R + A T +AE+FRDQG+DVL +D++ RF A EI
Sbjct: 193 GLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLA 252
Query: 277 LGRIPSAVGYQSTLALEMGELQER--ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHL 334
G P A GY ++ E+ L ER KGSIT + + V DD +P L
Sbjct: 253 AGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGIL 312
Query: 335 DATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIA 394
D VL R I+E+G YPAI+ L S S L + E + RR++ +L RY+ +D+I
Sbjct: 313 DGHIVLDRAIAERGRYPAINVLAS-VSRLAPRVWSPEERKLVRRLRALLARYEETEDLIR 371
Query: 395 ILGMDELSEED-KLVVARARKLERFMSQ----PFHVAESFTGL 432
+ + S+ + + K+ F++Q P + + F L
Sbjct: 372 LGAYRKGSDPELDEAIRLVPKIYEFLTQGPDEPTSLQDPFADL 414
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 173 bits (440), Expect = 1e-43
Identities = 117/392 (29%), Positives = 193/392 (49%), Gaps = 39/392 (9%)
Query: 67 DGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQ 126
+G GD V + + +PVG LGR+++ +G P+D +GAI I + + ++
Sbjct: 75 EGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKR 134
Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
+ + G+K ID + KG K+G+F G+GVGK+ L M +I A V A +
Sbjct: 135 GLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMIVKGCLAP--IKVVALI 191
Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246
GER RE + + + + ++ ++ P R A ++VA
Sbjct: 192 GERGREIPEFIEKNLGGDL-------------ENTVIVVATSDDSPLMRKYGAFCAMSVA 238
Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGY-QSTLALEMGELQERI-TTT 304
E+F++QG DVLF +D++ RF A EI LG P++ GY S L+L + +L ER
Sbjct: 239 EYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSL-LPQLMERAGKEE 297
Query: 305 LKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLE 364
KGSIT+ + V DD++DP S + LD VLSR++++ GIYP I+ L+S S ++
Sbjct: 298 GKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMN 357
Query: 365 IDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMD-ELSEEDKLVVARARKLERFM 419
DI+ EH AR+ + + K + +I I G D EL E +++ +E+F+
Sbjct: 358 -DIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKELDE----AISKKEFMEQFL 412
Query: 420 SQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451
Q P + E+T + +++
Sbjct: 413 KQN----------PNELFPFEQTFEQLEEILR 434
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 166 bits (421), Expect = 2e-41
Identities = 129/452 (28%), Positives = 214/452 (47%), Gaps = 48/452 (10%)
Query: 11 GRIQQIMG----AVVDVVFVNSLPPIFSSLETSDKGSRIVFEVV---QHLGEKTVRCIAM 63
GR+ Q+ G AVV V + L L D + EV+ QH T +
Sbjct: 25 GRVTQVTGTILKAVVPGVRIGEL----CYLRNPDNSLSLQAEVIGFAQHQALLT----PL 76
Query: 64 SRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSY 123
G+S V TGT V VGE LGR+++ +G+P D + ++ +P+
Sbjct: 77 GEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAP 136
Query: 124 TEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183
+ + L+ G++VID + +G ++G+F AG GK+ L+ LI + A +V
Sbjct: 137 MSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS---AEVDVTVL 193
Query: 184 AGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243
A +GER RE E I+S + + + K L+ + P R++
Sbjct: 194 ALIGERGRE----VREFIESDLGEEGLR--------KAVLVVATSDRPSMERAKAGFVAT 241
Query: 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT 303
++AE+FRDQG+ VL +D++ RF +A EI G P+ GY ++ + L ER
Sbjct: 242 SIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ 301
Query: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363
+ KGSIT++ + V DD+T+P + + LD +LSR+++ YPAID L S S ++
Sbjct: 302 SDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVM 361
Query: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFM 419
IV +EH A R++E+L +Y+ ++ ++ I G D+ +++ + R + F+
Sbjct: 362 N-QIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQ---AIERIGAIRGFL 417
Query: 420 SQPFHVAESFTGLPGKFVSLEETIRGFKGLVQ 451
Q H F ET+ + L Q
Sbjct: 418 RQGTHELSHF----------NETLNLLETLTQ 439
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 164 bits (416), Expect = 6e-41
Identities = 116/415 (27%), Positives = 192/415 (46%), Gaps = 29/415 (6%)
Query: 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLS 70
G I +I ++ SLP + + ++ EVV E + +DGL
Sbjct: 31 GPIVEIGPTLLRA----SLPGVAQGELCRIEPQGMLAEVVSIEQE-MALLSPFASSDGLR 85
Query: 71 RGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDA 130
G V G V VG GRI++ +G P+D G ++ + R + P PS +
Sbjct: 86 CGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWRELDCPPPSPLTRQPIE 144
Query: 131 SILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190
+LTTGI+ ID I +G +IG+F AGVGK+ L+ L A + V A +GER
Sbjct: 145 QMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGML---CADSAADVMVLALIGERG 201
Query: 191 REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250
RE E ++ + + R V + + P R + T T+AE+FR
Sbjct: 202 RE----VREFLEQVLTPEARARTVVVVATS--------DRPALERLKGLSTATTIAEYFR 249
Query: 251 DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310
D+G+ VL D++ R+ +A EI G P+A + ++ + L ER + +GSIT
Sbjct: 250 DRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSIT 309
Query: 311 SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQ 370
+ + V DD+ +P + LD VLSR+++ G YPAID S S ++ IV
Sbjct: 310 AFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMP-QIVSA 368
Query: 371 EHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFMSQ 421
+A++++ +L Y+ ++ ++ + G D ++E + R + F+ Q
Sbjct: 369 GQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADE---ALQRYPAICAFLQQ 420
>gnl|CDD|181253 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 163 bits (414), Expect = 1e-40
Identities = 129/426 (30%), Positives = 209/426 (49%), Gaps = 29/426 (6%)
Query: 12 RIQ-QIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLS 70
RIQ I+ A + V + + I + +++ +R +VV E+T+ + + GLS
Sbjct: 12 RIQGPIIEAELPDVAIGEICEIRAGWHSNEVIARA--QVVGFQRERTILSL-IGNAQGLS 68
Query: 71 RGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIIS----SEKRAIHQPSPSYTEQ 126
R + TG ++V VGEA LG +++ G+ V+ A + SE+R I PSY E+
Sbjct: 69 RQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAER 128
Query: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
L TG++ ID + G ++G+F AG GKT L+ LI + + V +
Sbjct: 129 RPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEH---SEADVFVIGLI 185
Query: 187 GERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVA 246
GER RE + + S R+ KC L+Y + R AL TVA
Sbjct: 186 GERGREVTEFVESLRAS-----SRR-------EKCVLVYATSDFSSVDRCNAALVATTVA 233
Query: 247 EHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK 306
E+FRDQG+ V+ F+D++ R+ +A +++ G +P+ GY +++ + L ER TL
Sbjct: 234 EYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLA 293
Query: 307 GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEID 366
GSIT+ + + +++ DP + LD LSR+++ KG YPAID L S S +
Sbjct: 294 GSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFG-Q 352
Query: 367 IVGQEHYDVARRVQEILQRYKSLQDIIAILG---MDELSEEDKLVVARARKLERFMSQPF 423
+ +H +A +++L R + LQ I LG E ++ D+ + R LE F+ Q
Sbjct: 353 VTDPKHRQLAAAFRKLLTRLEELQLFID-LGEYRRGENADNDRAMDKRP-ALEAFLKQDV 410
Query: 424 HVAESF 429
SF
Sbjct: 411 AEKSSF 416
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 157 bits (399), Expect = 5e-39
Identities = 118/390 (30%), Positives = 185/390 (47%), Gaps = 34/390 (8%)
Query: 41 KGSRIVFEVVQHLGEKTVRC------------IAMSRTDGLSRGDCVIDTGTQITVPVGE 88
KG + V +GE V C + +T+ + GD V + +P G
Sbjct: 36 KGPKAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGN 95
Query: 89 ATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQK 148
LG++++ GE ++++ I +K + P E+ + TGIK ID +
Sbjct: 96 HLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGI 155
Query: 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208
G KIG+F G+GVGK+ L+ + N AKA +V + VGER RE D
Sbjct: 156 GQKIGIFAGSGVGKSTLLGMIAKN-AKAD--INVISLVGERGREVKDFI----------- 201
Query: 209 PRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQ 268
RK G K ++ +E + R A ++AE+FRDQG +VL +D++ RF
Sbjct: 202 -RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFAD 260
Query: 269 ANSEISALLGRIPSAVGYQSTLALE--MGELQERITTTLKGSITSVQAIYVPADDLTDPA 326
A + + +P +G + TL +E M +L ER T KGSIT + + V DDL P
Sbjct: 261 ARRSVDIAVKELP--IGGK-TLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDLNGPV 317
Query: 327 PATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRY 386
P + LD VL R+++ YPAI LDS S ++E +IV H+ +A +++IL Y
Sbjct: 318 PDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIME-EIVSPNHWQLANEMRKILSIY 376
Query: 387 KSLQDIIAILGMDELSEEDKLVVARARKLE 416
K ++ LG + + E+ + K+E
Sbjct: 377 KE-NELYFKLGTIQENAENAYIFECKNKVE 405
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 155 bits (392), Expect = 3e-38
Identities = 129/435 (29%), Positives = 208/435 (47%), Gaps = 37/435 (8%)
Query: 7 TESVGRIQQIMG----AVVDVVFVNSLPPI----FSSLETSDKGSRIVFEVVQHLGEKTV 58
T VGRI +++G AVV V V + + L T G F + LGE T
Sbjct: 21 TTVVGRITEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELT- 79
Query: 59 RCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQ--GAIIS-SEKRA 115
G+S VI TG + + G LGR++N +GEP+D + G + + E
Sbjct: 80 ---------GVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYP 130
Query: 116 IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175
I + P ++ +IL+TG++ ID + +G +IG+F GAGVGK+ L+ + N +
Sbjct: 131 IFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEE 190
Query: 176 AHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGAR 235
A +V A +GER RE E I+ + G + ++ ++ R
Sbjct: 191 AD--VNVIALIGERGRE----VREFIE--------GDLGEEGMKRSVIVVSTSDQSSQLR 236
Query: 236 SRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMG 295
A G +AE+FRDQG+ V+ +D++ RF +A E+ G P+ GY ++ +
Sbjct: 237 LNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLP 296
Query: 296 ELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDP 355
+L ER + KG+IT+ + V DD+ +P + LD VLS +++ YPAID
Sbjct: 297 KLLERSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDV 356
Query: 356 LDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE-EDKLVVARARK 414
L S S +L IV +E + + +E+L +YK+ + +I I S+ E + K
Sbjct: 357 LASISRLLTA-IVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDK 415
Query: 415 LERFMSQPFHVAESF 429
L RF+ Q H ++
Sbjct: 416 LNRFLKQDIHEKTNY 430
>gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 152 bits (387), Expect = 1e-37
Identities = 100/310 (32%), Positives = 159/310 (51%), Gaps = 22/310 (7%)
Query: 92 GRIMNVIGEPVDDQGAIISSEKR-AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGG 150
GR++N +GEP+D G + + +I +P ++ + L TG++VID+ +P G
Sbjct: 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQ 166
Query: 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-FAGVGERTREGNDLYHEMIDSKVNIDP 209
+IG+F G+GVGK+ L+ L A+A +V A VGER RE E ++ + D
Sbjct: 167 RIGIFAGSGVGKSTLLAML----ARADAFDTVVIALVGERGRE----VREFLEDTLA-DN 217
Query: 210 RKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA 269
K + V + +E P R LT +AE+FRD+G++VL VD++ RF A
Sbjct: 218 LKKAVAVVATS--------DESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHA 269
Query: 270 NSEISALLGRIPSAVGYQSTLALEMGELQERI--TTTLKGSITSVQAIYVPADDLTDPAP 327
E++ G P A GY ++ E+ L ER GSIT + ++ V DD DP
Sbjct: 270 AREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVA 329
Query: 328 ATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYK 387
+ LD VL R I+E+G YPA+DPL S S + ++ + R++ ++ R++
Sbjct: 330 DSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQR-KLVSRLKSMIARFE 388
Query: 388 SLQDIIAILG 397
+D+ I G
Sbjct: 389 ETRDLRLIGG 398
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 150 bits (380), Expect = 8e-37
Identities = 108/362 (29%), Positives = 174/362 (48%), Gaps = 21/362 (5%)
Query: 36 LETSDKGSRIVFEVVQHLGEKTVRCIAM--SRTDGLSRGDCVIDTGTQITVPVGEATLGR 93
I EVV G K + M + ++ G V TG + V VG +G+
Sbjct: 46 HTKGGGDKAIKAEVV---GFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGLIGQ 102
Query: 94 IMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIG 153
+++ +GEP+D + Q P+ ++ + G++ ID + KG ++G
Sbjct: 103 VLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVG 162
Query: 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNN 213
+F G+GVGK+ L M +I A +V A +GER RE E I+ ++
Sbjct: 163 IFAGSGVGKSTL-MGMIARNTSAD--LNVIALIGERGRE----VREFIE--------RDL 207
Query: 214 GSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEI 273
G + ++ ++P R + A T +AE+FRDQG +V+ +D++ R A EI
Sbjct: 208 GPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREI 267
Query: 274 SALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTH 333
+G P+ GY ++ + +L ER T GSIT+ + V DD+ +P T
Sbjct: 268 GLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGI 327
Query: 334 LDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDII 393
LD VL RQ++ KG YPAI+ L S S ++ IV EH + A R +E+L Y++ +D+I
Sbjct: 328 LDGHFVLDRQLANKGQYPAINVLKSVSRVMN-HIVSPEHKEAANRFRELLSTYQNSEDLI 386
Query: 394 AI 395
I
Sbjct: 387 NI 388
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 149 bits (378), Expect = 2e-36
Identities = 104/363 (28%), Positives = 179/363 (49%), Gaps = 23/363 (6%)
Query: 64 SRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSY 123
GLSRG VI G ++VPVG A LGR+++ +GEP+D G + E + P
Sbjct: 78 GELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDP 137
Query: 124 TEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183
+ + L TG++++D + +G ++G+F AGVGK+ L+ +V
Sbjct: 138 MSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG---TQCDVNVI 194
Query: 184 AGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243
A +GER RE + + E+I + S V S + R++ A
Sbjct: 195 ALIGERGREVRE-FIELI-----LGEDGMARSVVVCATS------DRSSIERAKAAYVAT 242
Query: 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT 303
+AE+FRD+G VL +D++ RF +A EI G P+ G+ ++ E+ L ER
Sbjct: 243 AIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM 302
Query: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363
GSIT++ + + +DP LD +LSR+I+ + YPAID L S S ++
Sbjct: 303 GETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM 362
Query: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDELSEEDKLVVARARKLERFM 419
+V +EH A R++++L +++ ++ ++ + G D +++E +A+ + F+
Sbjct: 363 P-QVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADE---AIAKIDAIRDFL 418
Query: 420 SQP 422
SQ
Sbjct: 419 SQR 421
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 146 bits (370), Expect = 1e-35
Identities = 111/395 (28%), Positives = 198/395 (50%), Gaps = 30/395 (7%)
Query: 48 EVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGA 107
EV+ G+K V + + G++ G V+ +P+G + LGR+++ G +D +G
Sbjct: 68 EVMGFSGDK-VFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGP 126
Query: 108 IISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIM 167
+ + + + P+ + + + L GI+ I+ + +G ++GLF G GVGK+VL +
Sbjct: 127 MKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVL-L 185
Query: 168 ELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQ 227
++ +A V +GER RE E I+ + G + ++
Sbjct: 186 GMMTRFTEAD--IIVVGLIGERGRE----VKEFIEHIL--------GEEGLKRSVVVASP 231
Query: 228 MNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQ 287
++ P R R A+ +AE+FRD+G++VL +D++ RF QA EI+ +G P+ GY
Sbjct: 232 ADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYP 291
Query: 288 STLALEMGELQERITTTLK--GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQIS 345
++ ++ +L ER GSIT+ + DD DP ++ LD VLSR+++
Sbjct: 292 PSVFAKLPKLVERAGNAEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLA 351
Query: 346 EKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAI----LGMDEL 401
E+G YPAID ++++ S + +V EH A+R +++ RY+ +D+I++ G D
Sbjct: 352 EEGHYPAID-IEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGD-- 408
Query: 402 SEEDKLVVARARKLERFMSQ----PFHVAESFTGL 432
E L +AR L +F+ Q +A+S L
Sbjct: 409 -PETDLAIARFPHLVQFLRQGLRENVSLAQSREQL 442
>gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 145 bits (367), Expect = 3e-35
Identities = 114/403 (28%), Positives = 182/403 (45%), Gaps = 33/403 (8%)
Query: 42 GSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEP 101
G + EVV G++ + + +G+ RG + V A LGR++N +GEP
Sbjct: 51 GRPVPCEVVGFRGDRAL-LMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEP 109
Query: 102 VDDQGAII-SSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV 160
+D +G + + P P ++ L G++ ++ +G ++G+F G+GV
Sbjct: 110 IDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGV 169
Query: 161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSK 220
GK+VL+ L N SV +GER RE E + + + S V
Sbjct: 170 GKSVLLSMLARNADAD---VSVIGLIGERGRE----VQEFLQDDLGPEGLAR--SVVVVA 220
Query: 221 CSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRI 280
S +EP R + A L +AE+FRDQG+DVL +D++ RF A EI G
Sbjct: 221 TS------DEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEP 274
Query: 281 PSAVGYQSTLALEMGELQERI--TTTLKGSITSVQAIYVPADDLTDP-APATSFTHLDAT 337
P+ GY T+ E+ L ER +G+IT + + V DD +P A A LD
Sbjct: 275 PTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDHNEPVADAVRGI-LDGH 333
Query: 338 TVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAI-- 395
V+ R I+E+G YPAI+ L S S + E + RR ++++ Y ++++I +
Sbjct: 334 IVMERAIAERGRYPAINVLKSVSRTMP-GCNDPEENPLVRRARQLMATYADMEELIRLGA 392
Query: 396 --LGMDELSEEDKLVVARARKLERFMSQ----PFHVAESFTGL 432
G D +E + LE F+ Q +AE + L
Sbjct: 393 YRAGSDPEVDE---AIRLNPALEAFLRQGKDEATSLAEGYARL 432
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 144 bits (365), Expect = 5e-35
Identities = 102/324 (31%), Positives = 167/324 (51%), Gaps = 20/324 (6%)
Query: 75 VIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILT 134
V G Q +PVG + LGR+++ +G P+D G I + ++ + H P + + L
Sbjct: 88 VTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLD 147
Query: 135 TGIKVIDLISPYQKGGKIGLFGGAGVGKTVLI-MELINNVAKAHGGYSVFAGVGERTREG 193
G++ I+ + KG ++GLF G+GVGK+VL+ M A V VGER RE
Sbjct: 148 VGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADV----IVVGLVGERGRE- 202
Query: 194 NDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQG 253
E I+ + + R + ++ + P R + T T+AE+FRDQG
Sbjct: 203 ---VKEFIEEILGEEGRA--------RSVVVAAPADTSPLMRLKGCETATTIAEYFRDQG 251
Query: 254 QDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT--TLKGSITS 311
+VL +D++ R+ QA EI+ +G P+ GY ++ ++ L ER +GSIT+
Sbjct: 252 LNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITA 311
Query: 312 VQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQE 371
+ DDL DP S LD VLSR++++ G YPAID S S ++ + ++ +E
Sbjct: 312 FYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPM-VISEE 370
Query: 372 HYDVARRVQEILQRYKSLQDIIAI 395
H + RRV+++ Y+ +D+I+I
Sbjct: 371 HLEAMRRVKQVYSLYQQNRDLISI 394
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 144 bits (364), Expect = 5e-35
Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 17/330 (5%)
Query: 66 TDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTE 125
T GL G V+ + VPVGEA LGR+++ G P+D + K P P+
Sbjct: 73 TIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMPPPAMVR 132
Query: 126 QSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 185
Q L TGI+ ID ++ +G ++G+F GVGK+ L+ L N +V
Sbjct: 133 QPI-TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN---APDADSNVLVL 188
Query: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245
+GER RE E ID ++ + RK +C ++ + P R R T+
Sbjct: 189 IGERGRE----VREFIDFTLSEETRK--------RCVIVVATSDRPALERVRALFVATTI 236
Query: 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305
AE FRD G+ V+ D++ R+ +A EI+ G + Y + + L ER
Sbjct: 237 AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE 296
Query: 306 KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEI 365
KGSIT+ + V DD+ +P + LD VLSR+++E+G YPAID L + S + +
Sbjct: 297 KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV 356
Query: 366 DIVGQEHYDVARRVQEILQRYKSLQDIIAI 395
+ EH +A ++ L Y+ ++ +I I
Sbjct: 357 -VTSHEHRQLAAILRRCLALYQEVELLIRI 385
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 140 bits (354), Expect = 9e-34
Identities = 100/391 (25%), Positives = 181/391 (46%), Gaps = 26/391 (6%)
Query: 36 LETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIM 95
+E+ D + I +VV + T + G+ G V + + +G++ LGR++
Sbjct: 44 IESVD-ETFIEAQVVGFDRDITY-LMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVI 101
Query: 96 NVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLF 155
N +GEP+D +G + S P ++ + L G+ I+ + KG ++GL
Sbjct: 102 NGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLM 161
Query: 156 GGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGS 215
G+GVGK+VL + +I +A V +GER RE E I+ + +
Sbjct: 162 AGSGVGKSVL-LGMITRYTQAD--VVVVGLIGERGRE----VKEFIEHSL--------QA 206
Query: 216 AVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA 275
A +K ++ +E P R + +A ++RD+G DVL VD++ R+ A EI+
Sbjct: 207 AGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL 266
Query: 276 LLGRIPSAVGYQSTLALEMGELQERI-TTTLKGSITSVQAIYVPADDLTDPAPATSFTHL 334
LG P+ GY + + L E ++ G++T++ + DD DP + L
Sbjct: 267 SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVL 326
Query: 335 DATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIA 394
D VLSR+++E G YPAID S S + ++G + A +++ Y +++ +I
Sbjct: 327 DGHIVLSRKLAEAGHYPAIDISQSISRCMS-QVIGSQQAKAASLLKQCYADYMAIKPLIP 385
Query: 395 ----ILGMDELSEEDKLVVARARKLERFMSQ 421
+ G D ++++ V + +F+ Q
Sbjct: 386 LGGYVAGADPMADQ---AVHYYPAITQFLRQ 413
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases.
Length = 578
Score = 121 bits (305), Expect = 4e-28
Identities = 102/336 (30%), Positives = 155/336 (46%), Gaps = 38/336 (11%)
Query: 116 IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175
+ P P Y E+ L TG +++D P KGG + G G GKTV +L AK
Sbjct: 190 VRIPRP-YKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQL----AK 244
Query: 176 -AHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGA 234
+ V+ G GER E D+ E + K DP+ G + + L+ N P A
Sbjct: 245 WSDADIVVYIGCGERGNEMTDVLEEFPELK---DPK--TGKPLMERTVLIANTSNMPVAA 299
Query: 235 RSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEM 294
R TG+T+AE+FRD G DV D+ R+ +A EIS L +P GY + LA +
Sbjct: 300 REASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRL 359
Query: 295 GELQER--ITTTL-----KGSITSVQAIYVPADDLTDPAPATS------FTHLDATTVLS 341
E ER TL GS+T + A+ P D ++P + F LDA
Sbjct: 360 AEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQR 419
Query: 342 RQISEKGIYPAIDPLDSNSSMLEI------DIVGQEHYDVARRVQEILQRYKSLQDIIAI 395
R +PAI+ L S S +++ + V + ++ ++LQ+ LQ+I+ +
Sbjct: 420 RH------FPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQL 473
Query: 396 LGMDELSEEDKLVVARARKL-ERFMSQ-PFHVAESF 429
+G D L E KL++ AR + E F+ Q F +++
Sbjct: 474 VGPDALPERQKLILEVARMIREAFLQQNAFDPVDTY 509
Score = 30.5 bits (69), Expect = 0.89
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 26/105 (24%)
Query: 10 VGRIQQIMGAVV-----------DVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTV 58
GRI ++ G +V +VV V ++ E+++ G+K
Sbjct: 1 KGRIIRVSGPLVVADGMKGAQMYEVVKVGEE--------------GLIGEIIRIEGDKAF 46
Query: 59 RCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVD 103
+ T G+ G+ V+ TG ++V +G LG I + + P+D
Sbjct: 47 IQVYEE-TSGIKPGEPVVGTGAPLSVELGPGLLGSIYDGVQRPLD 90
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 121 bits (305), Expect = 4e-28
Identities = 98/364 (26%), Positives = 164/364 (45%), Gaps = 34/364 (9%)
Query: 2 TTKAKTESVGRIQQIMGAVVD-VVFVNSLPPI-FSSLETSDKGSRIVFEVVQHLGEKTVR 59
+ +GR++ +V D + FV+ LP L + GSR +L E+ V
Sbjct: 20 EPQPDAREIGRVE----SVGDGIAFVSGLPDAALDELLRFEGGSR---GFAFNLEEELVG 72
Query: 60 CIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQP 119
+ + T + G V TG + VPVG+ LGR+++ +G P+D G + ++ +R + +P
Sbjct: 73 AVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERP 132
Query: 120 SPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 179
+P+ E+ L TGIKV+D + P +G + + G GKT + ++ I N K
Sbjct: 133 APAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIIN-QKDSDV 191
Query: 180 YSVFAGVGERTREGNDLYHEMIDSKVN--IDPRKNNGSAVGSKCSLLYGQMNEPPGARSR 237
V+ +G++ S V I+ + +G+ +++ + ++PPG +
Sbjct: 192 ICVYVAIGQKA------------SAVARVIETLREHGAL--EYTTVVVAEASDPPGLQYL 237
Query: 238 VALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGEL 297
G +AE+FRDQGQD L D++ + A E+S LL R P Y + L
Sbjct: 238 APFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRL 297
Query: 298 QERITTTLK----GSITSVQAIYVPADDLTD--PAPATSFTHLDATTVLSRQISEKGIYP 351
ER GS+T++ I A +L+ P S T D L + G P
Sbjct: 298 LERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISIT--DGQIYLDSDLFAAGQRP 355
Query: 352 AIDP 355
A+D
Sbjct: 356 AVDV 359
>gnl|CDD|162170 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases.
Length = 458
Score = 120 bits (302), Expect = 1e-27
Identities = 104/371 (28%), Positives = 169/371 (45%), Gaps = 26/371 (7%)
Query: 66 TDGLSR-GDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYT 124
T GL G V TG + +PV E LGRI+N GEP+D I+ E+R I+ +
Sbjct: 57 TTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPY 116
Query: 125 EQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS--- 181
+ + TGI ID ++ +G K+ +F G+G+ L + I A G S
Sbjct: 117 AREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESEFA 175
Query: 182 -VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL 240
VFA +G E N + + G+ + + ++P R
Sbjct: 176 VVFAAMGITYEEANFFMKDF----------EETGAL--ERAVVFLNLADDPAVERIVTPR 223
Query: 241 TGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQE 299
LT AE+ ++ VL + ++ + +A EISA +P GY + ++ + E
Sbjct: 224 MALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYE 283
Query: 300 R--ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLD 357
R KGSIT + + +P DD+T P P + + VLSR++ KGIYP I+ L
Sbjct: 284 RAGRVKGKKGSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLP 343
Query: 358 SNSSMLEIDI----VGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARAR 413
S S +++ I ++H DV+ ++ + L+ ++AI+G + LSE D+ + A
Sbjct: 344 SLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFAD 403
Query: 414 KLE-RFMSQPF 423
E RF+ Q
Sbjct: 404 LFERRFVRQGR 414
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 115 bits (289), Expect = 3e-26
Identities = 88/315 (27%), Positives = 165/315 (52%), Gaps = 20/315 (6%)
Query: 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLI 143
+P+G A LGR+++ G+P+D A + E A+ P + +++ +L TG++ I+ +
Sbjct: 110 LPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINAL 169
Query: 144 SPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGERTREGNDLYHEMID 202
+G ++GLF G+GVGK+VL+ +A+ + G +GER RE D ++
Sbjct: 170 LTVGRGQRMGLFAGSGVGKSVLL----GMMARYTQADVIVVGLIGERGREVKDFIENIL- 224
Query: 203 SKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDN 262
G+ ++ ++ + P R + A +AE FRD+GQ VL +D+
Sbjct: 225 -----------GAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDS 273
Query: 263 IFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLK--GSITSVQAIYVPAD 320
+ R+ A EI+ +G P+ GY ++ ++ L ER + GSIT+ + D
Sbjct: 274 LTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGD 333
Query: 321 DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQ 380
D DP ++ LD VLSR+++E G YPAID ++++ S ++ ++HY R+ +
Sbjct: 334 DQQDPIADSARAILDGHIVLSRRLAEAGHYPAID-IEASISRAMTALIDEQHYARVRQFK 392
Query: 381 EILQRYKSLQDIIAI 395
++L ++ +D++++
Sbjct: 393 QLLSSFQRNRDLVSV 407
>gnl|CDD|162171 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase.
Length = 591
Score = 109 bits (275), Expect = 1e-24
Identities = 90/327 (27%), Positives = 161/327 (49%), Gaps = 36/327 (11%)
Query: 116 IHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAK 175
+ P P + + +LT G +V+D + P +GG + G G GKTV +++
Sbjct: 194 VRSPRPVTEKLPANTPLLT-GQRVLDALFPCVQGGTTAIPGAFGCGKTV--------ISQ 244
Query: 176 AHGGYS-----VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNE 230
+ YS V+ G GER E ++ + + + +D R+ ++ + +L+ N
Sbjct: 245 SLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGRE---ESIMKRTTLVANTSNM 301
Query: 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTL 290
P AR TG+T+AE+FRD G +V D+ R+ +A EIS L +P+ GY + L
Sbjct: 302 PVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 361
Query: 291 ALEMGELQERI-------TTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTV---L 340
+ ER + +GS++ V A+ P D +D P TS T L V L
Sbjct: 362 GARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSD--PVTSAT-LGIVQVFWGL 418
Query: 341 SRQISEKGIYPAIDPLDSNSS-MLEIDIVGQEHY----DVARRVQEILQRYKSLQDIIAI 395
++++++ +P+++ L S S M ++ ++ Y + + +EILQ + L +I+ +
Sbjct: 419 DKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQL 478
Query: 396 LGMDELSEEDKLVVARARKL-ERFMSQ 421
+G D L+E DK+ + A+ + E F+ Q
Sbjct: 479 VGKDALAETDKITLEVAKLIKEDFLQQ 505
>gnl|CDD|179776 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 107 bits (271), Expect = 4e-24
Identities = 124/402 (30%), Positives = 176/402 (43%), Gaps = 92/402 (22%)
Query: 67 DGLSRGDC---VIDTGTQ---ITVPVGEATLGRIMNVIGE---PVDDQGAIISSEKRAIH 117
D + GD V +T + I VP G + G + ++ E VDD A++ E
Sbjct: 128 DKVEAGDILGTVQETPSIEHKIMVPPGVS--GTVKEIVSEGDYTVDDTIAVLEDEDGEGV 185
Query: 118 -----------QPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLI 166
+P P Y E+ L TG +VID P KGG + G G GKTV
Sbjct: 186 ELTMMQKWPVRRPRP-YKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQ 244
Query: 167 MELINNVAKAHGGYS-----VFAGVGERTREGNDLYHEMIDSKVN----IDPRKNNGSAV 217
+L AK ++ ++ G GER GN EM + IDP+
Sbjct: 245 HQL----AK----WADADIVIYVGCGER---GN----EMTEVLEEFPELIDPKTGR---- 285
Query: 218 GSKCSLLYGQM----------NEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267
L M N P AR TG+T+AE++RD G DVL D+ R+
Sbjct: 286 ----PL----MERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWA 337
Query: 268 QANSEISALLGRIPSAVGYQSTLALEMGELQER--ITTTL---KGSITSVQAIYVPADDL 322
+A EIS L +P GY + LA + E ER TL +GS+T + A+ P D
Sbjct: 338 EALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVSPPGGDF 397
Query: 323 TDPAPATSFTHLDATTV---LSRQISEKGIYPAIDPLDSNSSMLEIDIVGQ---EHY--D 374
++ P T T L V L +++++ +PAI+ L S S L +D V E+ D
Sbjct: 398 SE--PVTQNT-LRIVKVFWALDAELADRRHFPAINWLTSYS--LYLDQVAPWWEENVDPD 452
Query: 375 VARRVQE---ILQRYKSLQDIIAILGMDELSEEDKLV--VAR 411
E +LQR LQ+I+ ++G D L EED+L+ VAR
Sbjct: 453 WRELRDEAMDLLQREAELQEIVRLVGPDALPEEDRLILEVAR 494
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 108 bits (270), Expect = 5e-24
Identities = 112/425 (26%), Positives = 189/425 (44%), Gaps = 46/425 (10%)
Query: 38 TSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNV 97
+ K I+ EV+ +T +++S ++ G V+ ++ + + LGR+++
Sbjct: 47 SLSKSPPILAEVIG-FHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGRVLDG 105
Query: 98 IGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGG 157
G P+D + + + + + PS + I TGIK ID KG +IG+F
Sbjct: 106 FGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSE 165
Query: 158 AGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSA 216
G GK+ L++ +AK + +V A +GER RE + I+ K +A
Sbjct: 166 PGSGKS----SLLSTIAKGSKSTINVIALIGERGREVRE----------YIEQHKEGLAA 211
Query: 217 VGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276
+ ++ +E + +T+AE+FRDQG VLF +D++ R+ A E++
Sbjct: 212 --QRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALA 269
Query: 277 LGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAI-YVP--ADDLTDPAPATSFTH 333
G SA Y +++ + E ER KGSIT++ AI + P D TD +
Sbjct: 270 RGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAILHYPNHPDIFTDYLKSL---- 325
Query: 334 LDATTVLSRQISEKGIY-PAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDI 392
LD L+ Q K + P ID L S S + HY A ++ +L+ Y DI
Sbjct: 326 LDGHFFLTPQ--GKALASPPIDILTSLSRSAR-QLALPHHYAAAEELRSLLKAYHEALDI 382
Query: 393 IAILGMDELSEEDKLVVARARKL----ERFMSQPFHVAESFTGLPGKFVSLEETIRGFKG 448
I LG ++ L RA KL ++F+SQP + +L T++ +
Sbjct: 383 IQ-LGAYVPGQDAHL--DRAVKLLPSIKQFLSQPL----------SSYCALHNTLKQLEA 429
Query: 449 LVQGE 453
L++ E
Sbjct: 430 LLKHE 434
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 106 bits (265), Expect = 2e-23
Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 37/314 (11%)
Query: 55 EKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKR 114
E V + + L GD V TG + VPVG+ LGR+++ +G P+D G + SS +
Sbjct: 68 EDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRL 127
Query: 115 AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174
I +P+P +++ L TG+KVID + P +G + + G GKT + ++ I N
Sbjct: 128 PIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILN-Q 186
Query: 175 KAHGGYSVFAGVGERT----------REGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLL 224
K ++ +G+R RE + + ++ +
Sbjct: 187 KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIV----------------------V 224
Query: 225 YGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAV 284
+ N+PPG + ++ EHF +QG+DVL D++ + +A E+S LL R P
Sbjct: 225 VTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGRE 284
Query: 285 GYQSTLALEMGELQERITTTLK----GSITSVQAIYVPADDLTDPAPATSFTHLDATTVL 340
+ + L ER T + GS+T++ I A +++ P + D L
Sbjct: 285 AFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYL 344
Query: 341 SRQISEKGIYPAID 354
S + E G+ PA+D
Sbjct: 345 SPTLFELGVLPAVD 358
>gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit.
Length = 501
Score = 104 bits (261), Expect = 6e-23
Identities = 113/438 (25%), Positives = 181/438 (41%), Gaps = 64/438 (14%)
Query: 49 VVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAI 108
+ +L E +V + M + G V TG + VPVG+ LGR++N +G+P+D +G I
Sbjct: 61 IALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPI 120
Query: 109 ISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIME 168
S E R I + +P E+ + L TGIK ID + P +G + + G GKT + ++
Sbjct: 121 DSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAID 180
Query: 169 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLL--YG 226
I N K Y V+ +G++ S V L +G
Sbjct: 181 TIIN-QKDSDVYCVYVAIGQK------------------------ASTVAQVVRKLEEHG 215
Query: 227 QM----------NEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISAL 276
M ++ + TG T+AE+FRD G+ L D++ + A +IS L
Sbjct: 216 AMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLL 275
Query: 277 LGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYVPADDLTDPAPATSFT 332
L R P Y + L ER GS+T++ I A D++ P +
Sbjct: 276 LRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVIS 335
Query: 333 HLDATTVLSRQISEKGIYPAIDPLDSNS---SMLEIDIVGQEHYDVARRVQEILQRYKSL 389
D L + GI PAI+ S S +I + Q VA ++ L +Y+ L
Sbjct: 336 ITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQ----VAGSLRLELAQYREL 391
Query: 390 QDIIAILGMDELSEEDKLVVARARKLERFMSQ----PFHVAE----SFTGLPG--KFVSL 439
+ + D L E K + R ++L + Q P V E + G G + +
Sbjct: 392 -EAFSQFASD-LDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPV 449
Query: 440 EETIRGFKGLVQGEYDHL 457
++ +R F+ Q D+L
Sbjct: 450 DK-VRKFE---QELLDYL 463
>gnl|CDD|179779 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 104 bits (261), Expect = 7e-23
Identities = 113/385 (29%), Positives = 178/385 (46%), Gaps = 52/385 (13%)
Query: 66 TDGLSRGDC-VIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIH-QP-SPS 122
T GL D V TG + +PV E LGRI + +G P+D II ++ I+ P +P
Sbjct: 59 TTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPV 118
Query: 123 YTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS- 181
E + + TGI ID ++ +G K+ +F G+G+ L ++ AK G
Sbjct: 119 AREYPEE--FIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQ-AKVLGEEEN 175
Query: 182 ---VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGAR--- 235
VFA +G E N ++ + G + + ++P R
Sbjct: 176 FAVVFAAMGITFEEANFF----------MEDFEETG--ALERSVVFLNLADDPAIERILT 223
Query: 236 SRVALTGLTVAEHFR-DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEM 294
R+ALT AE+ ++G VL + ++ + +A EISA +P GY + ++
Sbjct: 224 PRMALT---AAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDL 280
Query: 295 GELQER--ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDAT-------TVLSRQIS 345
+ ER KGSIT + + +P DD+T P P D T VLSR++
Sbjct: 281 ATIYERAGRIKGKKGSITQIPILTMPDDDITHPIP-------DLTGYITEGQIVLSRELH 333
Query: 346 EKGIYPAIDPLDSNSSMLEIDIVG-----QEHYDVARRVQEILQRYKSLQDIIAILGMDE 400
KGIYP ID L S S +++ D +G ++H DVA ++ R K L+++ AI+G +
Sbjct: 334 RKGIYPPIDVLPSLSRLMK-DGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVGEEA 392
Query: 401 LSEEDKLVVARARKLE-RFMSQPFH 424
LSE D+ + A E F++Q F
Sbjct: 393 LSERDRKYLKFADAFEREFVNQGFD 417
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 100 bits (249), Expect = 1e-21
Identities = 75/256 (29%), Positives = 119/256 (46%), Gaps = 23/256 (8%)
Query: 182 VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241
++ G GER E D+ E K DP G + + L+ N P AR T
Sbjct: 686 IYIGCGERGNEMTDVLEEFPKLK---DP--KTGKPLMERTVLIANTSNMPVAAREASIYT 740
Query: 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI 301
G+T+AE+FRD G DV D+ R+ +A EIS L +P GY + LA ++ E ER
Sbjct: 741 GITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERA 800
Query: 302 TTTLK-------GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAID 354
+ GS++ + A+ P D ++P + + L ++ + +PAI+
Sbjct: 801 GRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAIN 860
Query: 355 PLDSNSSMLEIDIVGQ--------EHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDK 406
L S S L +D V E + + E+LQ+ LQ+I+ I+G D L E ++
Sbjct: 861 WLTSYS--LYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERER 918
Query: 407 LVVARARKL-ERFMSQ 421
++ AR L E ++ Q
Sbjct: 919 AILLVARMLREDYLQQ 934
Score = 38.1 bits (88), Expect = 0.005
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 87 GEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPY 146
GE T+ ++ + P + + ++ + P Y E+ L TG +VID P
Sbjct: 166 GEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 147 QKGGKIGLFGGAGVGKTV----LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 200
KGG + G G GK V LI+ + K Y + G G++T EGN+ + E+
Sbjct: 225 AKGGTAAIPGPFGSGKCVDGDTLILTKEFGLIKIKDLYEILDGKGKKTVEGNEEWTEL 282
>gnl|CDD|162169 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase.
Length = 466
Score = 82.1 bits (203), Expect = 3e-16
Identities = 92/373 (24%), Positives = 163/373 (43%), Gaps = 44/373 (11%)
Query: 78 TGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIH-QP----SPSYTEQSTDASI 132
TG + PV E LGR+ N G+P+D +++ + I+ QP + Y E+ +
Sbjct: 70 TGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEE-----M 124
Query: 133 LTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE 192
+ TGI ID+++ +G KI +F AG+ + ++ AG+ + +
Sbjct: 125 IQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ-----------AGLVKLPTK 173
Query: 193 GNDLYHE------MIDSKVNIDPRK-------NNGSAVGSKCSLLYGQMNEPPGARSRVA 239
HE VN++ + NGS + L N+P R
Sbjct: 174 DVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSM--ERVCLFLNLANDPTIERIITP 231
Query: 240 LTGLTVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQ 298
LT AE+ Q + VL + ++ + A E+SA +P G+ + ++ +
Sbjct: 232 RLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIY 291
Query: 299 ERI--TTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPL 356
ER GSIT + + +P DD+T P P + + + RQ+ + IYP I+ L
Sbjct: 292 ERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVL 351
Query: 357 DSNSSMLEIDI----VGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSEEDKLVVARA 412
S S +++ I ++H DV+ ++ K +Q + A++G + LS ED L +
Sbjct: 352 PSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFL 411
Query: 413 RKLER-FMSQPFH 424
K E+ F++Q +
Sbjct: 412 DKFEKNFIAQGPY 424
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 76.6 bits (189), Expect = 1e-14
Identities = 82/318 (25%), Positives = 132/318 (41%), Gaps = 21/318 (6%)
Query: 12 RIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSR 71
+I I G V+ V +++E D S V L V T G+S
Sbjct: 7 KITDITGNVITVEAEGVGYGELATVERKDGSS---LAQVIRLDGDKVTLQVFGGTRGIST 63
Query: 72 GDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDAS 131
GD V+ G + V E+ LGR N G+P+D G + E I PS + ++
Sbjct: 64 GDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDG-GPELEGEPIEIGGPSVNPVKRIVPRE 122
Query: 132 ILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 191
++ TGI +ID+ + + KI +F +G L+ + +A + G+G
Sbjct: 123 MIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARI---ALQAEADIIILGGMGLT-- 177
Query: 192 EGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR- 250
D Y D+ +N G+ + + ++PP V L VAE F
Sbjct: 178 --FDDYLFFKDTF------ENAGAL--DRTVMFIHTASDPPVECLLVPDMALAVAEKFAL 227
Query: 251 DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER-ITTTLKGSI 309
+ + VL + ++ F A EIS + +IPS GY +L ++ E+ + GSI
Sbjct: 228 EGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFEDGGSI 287
Query: 310 TSVQAIYVPADDLTDPAP 327
T + +P DD+T P P
Sbjct: 288 TIIAVTTMPGDDVTHPVP 305
>gnl|CDD|181753 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 67.8 bits (167), Expect = 6e-12
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 46 VFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQ 105
V+ + +L E V + + + + GD V TG + VPVGEA LGR++N +G+P+D +
Sbjct: 59 VYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGK 118
Query: 106 GAIISSEKRAIHQPSPSYTE-QSTDASILTTGIKVIDLISPYQKG 149
G I ++E R + + +P + +S L TGIK ID + P +G
Sbjct: 119 GPIEATETRPVERKAPGVIDRKSVHEP-LQTGIKAIDAMIPIGRG 162
Score = 35.8 bits (84), Expect = 0.022
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIP 281
G + E+F D G+D L D++ + A ++S LL R P
Sbjct: 241 AGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPP 281
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 61.6 bits (149), Expect = 4e-10
Identities = 77/352 (21%), Positives = 143/352 (40%), Gaps = 41/352 (11%)
Query: 61 IAMSRTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPV-----DDQGAIISSEKR- 114
I M + G V+ TG + +PVG LG+++N +G V A++ SE+
Sbjct: 94 ILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTL 153
Query: 115 -AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN- 172
+ +P+ +S L TG K +D + P +G + + G GKT + + I N
Sbjct: 154 GKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQ 213
Query: 173 ------VAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226
+ + S++ +G+R + H ++ S + +++
Sbjct: 214 VRINQQILSKNAVISIYVSIGQRCSNVARI-HRLLRSYGAL-----------RYTTVMAA 261
Query: 227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGY 286
EP G + +G+T+ E+F ++G+ L D++ + A +IS LL R P Y
Sbjct: 262 TAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAY 321
Query: 287 QSTLALEMGELQERITTTLK----GSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSR 342
+ L ER GS+T++ + ++D+T + D L
Sbjct: 322 PGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDT 381
Query: 343 QISEKGIYPAIDPLDSNSSMLEIDIVGQEHYD-----VARRVQEILQRYKSL 389
++ G PA++ L + VG + VA +++ IL Y+ L
Sbjct: 382 KLFTGGQRPAVN------IGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRKL 427
>gnl|CDD|183622 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 44.7 bits (106), Expect = 6e-05
Identities = 72/313 (23%), Positives = 119/313 (38%), Gaps = 61/313 (19%)
Query: 65 RTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYT 124
R L GD V L R+ +V G + + +P +
Sbjct: 55 RRFNLRTGDVV---EGVARPRERYRVLVRVDSVNGTDPEKLAR-----RPHFDDLTPLHP 106
Query: 125 EQ----STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180
+ T + L+ +V+DL++P KG + + GKTVL+ ++ VA H
Sbjct: 107 RERLRLETGSDDLSM--RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEV 164
Query: 181 SVFAG-VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVA 239
+ + ER E D+ R G S + PP RVA
Sbjct: 165 HLMVLLIDERPEEVTDM------------RRSVKGEVYAS-------TFDRPPDEHIRVA 205
Query: 240 LTGLTVAEHFRDQGQDVLFFVDNIFRFTQA-NSEISALLGRIPSAVGYQSTLALEMGELQ 298
L A+ +QG+DV+ +D++ R +A N+E+ + GR S G AL+
Sbjct: 206 ELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVES-SGRTLS--GGVDARALQR---P 259
Query: 299 ERITTTLK-----GSITSVQAIYVP----ADDLTDPAPATSFTHLDAT----TVLSRQIS 345
+R+ + GS+T + V D++ F T VL R+++
Sbjct: 260 KRLFGAARNIEEGGSLTIIATALVDTGSRMDEVI-------FEEFKGTGNMEIVLDRELA 312
Query: 346 EKGIYPAIDPLDS 358
+K ++PAID S
Sbjct: 313 DKRVFPAIDIAKS 325
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. Members of
this family differ in the specificity of RNA binding.
Length = 415
Score = 40.1 bits (94), Expect = 0.001
Identities = 83/381 (21%), Positives = 144/381 (37%), Gaps = 85/381 (22%)
Query: 62 AMSRTDGLSRGDCVIDTGTQITVP-VGEA--TLGRIMNVIGEPVDDQGAIISSEKRAIHQ 118
+ R L GD + G QI P GE L ++ +V G+ + K +
Sbjct: 84 SQIRRFNLRTGDTI--EG-QIRSPKEGERYFALLKVESVNGDDPEK-------AKNRVLF 133
Query: 119 PS--PSYTEQ----STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172
+ P Y + T L+T +V+DL +P KG + + GKTVL+ ++
Sbjct: 134 ENLTPLYPNERLRLETSTEDLST--RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA 191
Query: 173 VAKAHGG-YSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEP 231
+ + H + + ER E D M R G V S +EP
Sbjct: 192 ITRNHPEVELIVLLIDERPEEVTD----MQ--------RSVKGEVVAS-------TFDEP 232
Query: 232 PGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLA 291
+VA + A+ + +DV+ +D+I R +A + ++ G++ S G + A
Sbjct: 233 ASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSG-GVDAN-A 290
Query: 292 L-------------EMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHL-DAT 337
L E G GS+T + + D F +
Sbjct: 291 LHRPKRFFGAARNIEEG-----------GSLTIIATALIDTGSRMDEVIFEEFKGTGNME 339
Query: 338 TVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397
L R+++++ I+PAID S + E+ ++ E LQ+ L+ II+
Sbjct: 340 LHLDRKLADRRIFPAIDIKKSGTRKEEL-LLTPEE----------LQKIWVLRKIIS--P 386
Query: 398 MDELSEEDKLVVARARKLERF 418
MD + + L+ KL++
Sbjct: 387 MDSIEAMEFLI----SKLKKT 403
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 39.7 bits (92), Expect = 0.002
Identities = 14/57 (24%), Positives = 19/57 (33%)
Query: 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSK 204
G I + G G GKT L L + GG G + L ++ K
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGK 57
>gnl|CDD|181809 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 34.7 bits (81), Expect = 0.055
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 339 VLSRQISEKGIYPAIDPLDS 358
L R+++EK I+PAID S
Sbjct: 342 HLDRKLAEKRIFPAIDINRS 361
>gnl|CDD|181398 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma;
Provisional.
Length = 289
Score = 32.1 bits (73), Expect = 0.31
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 395 ILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGF 446
IL + +L+E +KL L RF +AESFT PG+FV + TI G
Sbjct: 10 ILEVYDLTEREKLF------LLRFEDP--ELAESFTFKPGQFVQV--TIPGV 51
>gnl|CDD|168831 PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed.
Length = 264
Score = 31.7 bits (72), Expect = 0.45
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 245 VAEHFRDQGQDVLF---FVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMG-ELQER 300
V HFRD V + R +A +E+S LGR P+A S LA E+G + +E
Sbjct: 105 VRRHFRDNSWSVKVPRRLKELHLRLGRATAELSQRLGRAPTA----SELAAELGMDREEV 160
Query: 301 ITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPL 356
+ + GS + +I D A A + T D L + + + + P + L
Sbjct: 161 VEGLVAGSAYNTLSIDSGGGSGDDDARAIADTLGDVDAGLDQIENREALRPLLAAL 216
>gnl|CDD|181771 PRK09302, PRK09302, circadian clock protein KaiC; Reviewed.
Length = 509
Score = 30.6 bits (70), Expect = 0.99
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 135 TGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183
TGI+ D I+ KG + G AG GKT+ ++ + N K VF
Sbjct: 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVF 65
>gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 30.6 bits (70), Expect = 1.0
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 340 LSRQISEKGIYPAID 354
L R++++K I+PA+D
Sbjct: 590 LDRKLADKRIFPAVD 604
Score = 27.9 bits (63), Expect = 6.4
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 128 TDASILTTGIKVIDLISPYQKG 149
T+ LTT +VIDLI P KG
Sbjct: 397 TEPKKLTT--RVIDLIMPIGKG 416
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 30.0 bits (67), Expect = 1.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 193
+ P ++GG I L G G GKT I +L A H V + R G
Sbjct: 344 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG 394
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 29.8 bits (67), Expect = 1.5
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNI 263
PR+ S + K + PG+ S VA+ V++ + D+ V N
Sbjct: 6 VAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDK------AVVNG 59
Query: 264 FRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPA 319
FT A+ E LLG P+ G + + +G +T+ G IT V + VPA
Sbjct: 60 LSFTVASGECFGLLG--PNGAGKSTIARMILG-----MTSPDAGKIT-VLGVPVPA 107
>gnl|CDD|182685 PRK10735, tldD, protease TldD; Provisional.
Length = 481
Score = 29.4 bits (66), Expect = 2.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 343 QISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVAR----RVQEI 382
+ +Y ++DPL S S ++DI+ + VAR RVQE+
Sbjct: 113 AVEHSPLYTSLDPLQSMSREEKLDIL-RRVDKVARAADKRVQEV 155
>gnl|CDD|184293 PRK13742, PRK13742, replication protein; Provisional.
Length = 245
Score = 28.8 bits (64), Expect = 3.2
Identities = 37/168 (22%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 250 RDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVG---YQSTLALEMGELQERITTTLK 306
RDQ + + FVD I S+ + + Y L E + I LK
Sbjct: 33 RDQKRMLYLFVDQI-----RKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALK 87
Query: 307 GSITSVQAIYVPADDLTDPAPATSF------THLDATTVLSRQISEKGIYPAIDPLDSNS 360
Y P +D D SF H + + S I+ I P L +
Sbjct: 88 SFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI-PFFIGLQNRF 146
Query: 361 SMLEIDIVGQEHYDVARRVQEILQRY-KSLQDIIAILGMDELSEEDKL 407
+ + + A R+ E L +Y K I L +D + E +L
Sbjct: 147 TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194
>gnl|CDD|183521 PRK12422, PRK12422, chromosomal replication initiation protein;
Provisional.
Length = 445
Score = 28.6 bits (64), Expect = 3.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 152 IGLFGGAGVGKTVLIMELINNVAKAHG 178
I LFG G GKT L+ ++ + ++ G
Sbjct: 144 IYLFGPEGSGKTHLMQAAVHALRESGG 170
>gnl|CDD|181420 PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase;
Reviewed.
Length = 298
Score = 28.5 bits (64), Expect = 4.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 113 KRAIHQPSPSYTEQSTDASILTTGIKVID 141
KR H S + +A I+ I D
Sbjct: 207 KRVTHTTIASILARRYNALIIPVFIFNDD 235
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 27.8 bits (62), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
G +IGL G G GK+ LI L +A G + G+
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI 375
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 27.8 bits (62), Expect = 5.6
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 9 SVGRIQQIMGAVVDVVFVNSLP---PIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSR 65
S G+ + + A+VD++F PI S T G +V H+ ++T + + M+
Sbjct: 455 SQGKPRNVARAIVDMLFPAEDDGRIPIVSV--TGTNGKTTTTRLVAHILKQTGKVVGMTT 512
Query: 66 TDGLSRGDCVIDTG 79
TDG+ G +++ G
Sbjct: 513 TDGVYIGKYLVEKG 526
>gnl|CDD|150772 pfam10136, SpecificRecomb, Site-specific recombinase. Members of
this family of bacterial proteins are found in various
putative site-specific recombinase transmembrane
proteins.
Length = 647
Score = 27.9 bits (63), Expect = 6.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 312 VQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAI 353
+ + P + D LDA TVL+ Q++ G+ P +
Sbjct: 132 AELLAEPPEPDDDAVARWRAELLDAITVLAYQVAATGLEPEL 173
>gnl|CDD|148833 pfam07454, SpoIIP, Stage II sporulation protein P (SpoIIP). This
family contains the bacterial stage II sporulation
protein P (SpoIIP) (approximately 350 residues long). It
has been shown that a block in polar cytokinesis in
Bacillus subtilis is mediated partly by transcription of
spoIID, spoIIM and spoIIP. This inhibition of polar
division is involved in the locking in of asymmetry
after the formation of a polar septum during
sporulation. Engulfment in Bacillus subtilis is mediated
by two complementary systems: the first includes the
proteins SpoIID, SpoIIM and SpoIIP (DMP) which carry out
the engulfment, and the second includes the
SpoIIQ-SpoIIIAGH (Q-AH) zipper, that recruits other
proteins to the septum in a second-phase of the
engulfment. The course of events follows as the
incorporation firstly of SpoIIB into the septum during
division to serve directly or indirectly as a landmark
for localising SpoIIM and then SpoIIP and SpoIID to the
septum. SpoIIP and SpoIID interact together to form part
of the DMP complex. SpoIIP itself has been identified as
an autolysin with peptidoglycan hydrolase activity.
Length = 258
Score = 27.6 bits (62), Expect = 6.8
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 19/64 (29%)
Query: 339 VLSRQISEKGIYPAI------DPLDSNSSMLEIDIVGQEHYDVARR-VQEILQRYKSLQD 391
L++++ + GI I D D N S Y +R V+++L+ ++
Sbjct: 105 RLAQELEKYGI-GVIHDKTVHDLPDYNQS-----------YKRSRETVKKLLKENPDIKA 152
Query: 392 IIAI 395
+I I
Sbjct: 153 VIDI 156
>gnl|CDD|180566 PRK06451, PRK06451, isocitrate dehydrogenase; Validated.
Length = 412
Score = 27.5 bits (61), Expect = 8.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 150 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 182
G IG+ GGA +G T + E I+ A + G +V
Sbjct: 311 GNIGMLGGANIGDTGGMFEAIHGTAPKYAGKNV 343
>gnl|CDD|178630 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing
protein; Provisional.
Length = 697
Score = 27.5 bits (61), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 189 RTREGNDLYHEMIDSKVNID 208
+ E LY+EM DS V+ID
Sbjct: 305 YSEEALCLYYEMRDSGVSID 324
>gnl|CDD|181654 PRK09109, motC, flagellar motor protein; Reviewed.
Length = 246
Score = 27.2 bits (61), Expect = 8.9
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 361 SMLEIDIVGQEHYDV-ARRVQEILQRYKSLQDII-AILG----MDELSEEDKL 407
S+LE++I QEH D+ A +V E + Y II A++G M+ L++ +L
Sbjct: 126 SVLEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMGLIHVMENLADPSQL 178
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 27.3 bits (61), Expect = 9.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
+FG G GKT L+ L+ + K GG ++FA
Sbjct: 439 IFGPTGSGKTTLLNFLLAQMQKY-GGMTIFA 468
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.135 0.374
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,692,319
Number of extensions: 512796
Number of successful extensions: 1398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 101
Length of query: 478
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 381
Effective length of database: 3,898,497
Effective search space: 1485327357
Effective search space used: 1485327357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)