HHsearch alignment for GI: 254780616 and conserved domain: COG0224
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=607.33 Aligned_cols=285 Identities=36% Similarity=0.593 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 99999999875689999999999999999999999830236999999999997301575442100024433343255311
Q gi|254780616|r 5 KEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLLVIC 84 (294)
Q Consensus 5 k~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivi 84 (294)
T Consensus 1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~--~~~~~~p~~~~~~e~kr~~~ivi 78 (287)
T COG0224 1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASA--NLELDHPLLKPTREVKRVLYIVI 78 (287)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 9578999998889999999999999988999999997046999999999999835--56667710034567882699999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 46424420011479999999876532038850388870403798510233320111114776640368899999765576
Q gi|254780616|r 85 TAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSL 164 (294)
Q Consensus 85 tSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~ 164 (294)
T Consensus 79 TSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~--p~~~~~~~i~~~~~~~ 156 (287)
T COG0224 79 TSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDN--PSFEEAIQIADKILDA 156 (287)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCHHHHHHCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 56853010002999999999997503258824999976689999986696366687343568--7889999999999999
Q ss_pred HHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 506787505886201134432220442047887354221-1003655432247996787899999899999999999999
Q gi|254780616|r 165 FTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLE-QKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENK 243 (294)
Q Consensus 165 ~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~-~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alles~ 243 (294)
T Consensus 157 ~~~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~~~~~~~~~-~~~~efEpd~e~il~~Ll~~Y~~~~iy~alles~ 235 (287)
T COG0224 157 FLEGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIEDEAEEEEPG-LWDYEFEPDAEEILETLLPRYLESQLYGALLESK 235 (287)
T ss_pred HHCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHCCCC-CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 867988669999401022113345568874477543101112565-4424547988899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999989999999999999998988988999998525319
Q gi|254780616|r 244 ASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294)
Q Consensus 244 aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294)
T Consensus 236 asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL 286 (287)
T COG0224 236 ASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL 286 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998999999998729999999999977999998899999999668750