HHsearch alignment for GI: 254780616 and conserved domain: PRK13422
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional.
Probab=100.00 E-value=0 Score=620.44 Aligned_cols=291 Identities=30% Similarity=0.460 Sum_probs=256.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 98879999999987568999999999999999999999983023699999999999730157544210002443334325
Q gi|254780616|r 1 MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYL 80 (294)
Q Consensus 1 M~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (294)
T Consensus 1 Maslk~ik~RIkSVkst~KITkAMkmVAasKlrkaq~~~~~~rpY~~~~~~i~~~l~~--~~~~~~~p~l~~~~~-k~~~ 77 (298)
T PRK13422 1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTA--ASIDYPNPYLFDRDV-KRVG 77 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCC-CEEE
T ss_conf 9987999999998769999999999999999999999998515099999999999985--278877853135787-6279
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCC-CHHHHHHHHHH
Q ss_conf 53114642442001147999999987653203885038887040379851023332011111477664-03688999997
Q gi|254780616|r 81 LVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKG-VDFVQAHGIAR 159 (294)
Q Consensus 81 ~IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~I~~ 159 (294)
T Consensus 78 ~IvitSDrGLCG~~Nsni~k~~~~~i~~~~~~~~~~~~~~iG~Kg~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 157 (298)
T PRK13422 78 YIVTSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVK 157 (298)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99975897533430268999999999988856980899997068899999835777467761378887456999999999
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHH---HHH---HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6557650678750588620113443222044204788735---422---1100365543224799678789999989999
Q gi|254780616|r 160 QITSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWS---QDL---EQKQQDILSVYRYESTLYSVLDDIVLRSISS 233 (294)
Q Consensus 160 ~l~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~---~~~---~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~ 233 (294)
T Consensus 158 ~~~~~~~~~~~d~v~iiyn~F~s~~~q~~~~~~llPi~~~~~~~~~~~~~~~~~~~~~~y~fEp~~~~vL~~l~~~yl~~ 237 (298)
T PRK13422 158 VMLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEKATKGHWDYIYERDIEEVLNALCIRYIEA 237 (298)
T ss_pred HHHHHHHCCCCCEEEEEECEEEEEEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999866888889997220266378535556504676422122201332001145667401889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999989999999999999998988988999998525319
Q gi|254780616|r 234 RVFWIILENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294)
Q Consensus 234 ~l~~alles~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294)
T Consensus 238 ~iy~alles~aSE~aaRm~AM~~AT~NA~emi~~Ltl~yNr~RQa~IT~El~EIvsGaeAL 298 (298)
T PRK13422 238 QVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999899839999999999999999998899999998677339