Query gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus str. psy62] Match_columns 294 No_of_seqs 111 out of 2347 Neff 7.8 Searched_HMMs 33803 Date Wed Jun 1 15:22:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780616.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2hld_G ATP synthase gamma cha 100.0 0 0 538.1 29.8 277 2-294 1-277 (278) 2 >2ck3_G ATP synthase gamma cha 100.0 0 0 520.9 16.2 272 2-294 1-272 (272) 3 >2qe7_G ATP synthase subunit g 100.0 0 0 541.8 -5.3 285 1-294 1-285 (286) 4 >1fs0_G ATP synthase gamma sub 100.0 0 0 404.4 22.2 230 19-255 1-230 (230) 5 >1oao_C CODH, carbon monoxide 65.1 3.5 0.0001 20.8 1.8 23 80-103 20-43 (90) 6 >2d0t_A Indoleamine 2,3-dioxyg 52.4 8.1 0.00024 18.4 1.9 32 67-99 106-137 (203) 7 >1qw2_A Conserved hypothetical 49.9 5.8 0.00017 19.3 0.8 39 81-130 32-72 (102) 8 >1u55_A Heme-based methyl-acce 39.5 24 0.00071 15.4 3.3 47 60-107 107-153 (188) 9 >2p1l_B Beclin 1; apoptosis, a 31.3 32 0.00096 14.6 2.3 20 273-292 7-26 (31) 10 >2pk8_A Uncharacterized protei 29.6 35 0.001 14.4 3.9 37 96-132 16-52 (103) 11 >2k47_A Phosphoprotein, P prot 24.1 25 0.00073 15.4 0.6 12 267-278 57-68 (79) 12 >1sfe_A ADA O6-methylguanine-D 21.1 24 0.00072 15.4 0.1 13 80-92 26-38 (88) No 1 >>2hld_G ATP synthase gamma chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_G (G:) Probab=100.00 E-value=0 Score=538.10 Aligned_cols=277 Identities=25% Similarity=0.358 Sum_probs=237.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 88799999999875689999999999999999999999830236999999999997301575442100024433343255 Q gi|254780616|r 2 TSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLL 81 (294) Q Consensus 2 ~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (294) |||++||+||+||++|+|||+||||||++|++|+|+++++.+||++.+.+++.+++.. .+++....++ .++.++ T Consensus 1 Aslk~ik~RI~sv~~i~kIt~AMkmVA~akl~ka~~~~~~~~~y~~~i~~~~~~l~~~-----~~~~~~~~~~-~~~~~~ 74 (278) T 2hld_G 1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETK-----NLDVEATETG-APKELI 74 (278) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----C------------CCEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHCCCC-CCCEEE T ss_conf 9859999999998799999999999999999999999986053999999998734222-----6530000247-875169 Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 31146424420011479999999876532038850388870403798510233320111114776640368899999765 Q gi|254780616|r 82 VICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQI 161 (294) Q Consensus 82 IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l 161 (294) |||||||||||+||++|+|.+.+++++.. +...++++|+++..++++.+...... ......++++|..+..|++.+ T Consensus 75 IvitSDrGLCG~fN~~iik~~~~~i~~~~---~~~~~~v~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 150 (278) T 2hld_G 75 VAITSDKGLCGSIHSQLAKAVRRHLNDQP---NADIVTIGDKIKMQLLRTHPNNIKLS-INGIGKDAPTFQESALIADKL 150 (278) T ss_dssp EEECCSCCCSTTHHHHHHHHHHHHHHSCT---TCEEEEESHHHHHHHHHHCTTTEEEE-EECCSSSCCCHHHHHHHHHHH T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCEEECCHHHHHHHHCCCCEEEEE-EECCCCCCCCHHHHHHHHHHH T ss_conf 98528975067789999999986311234---44402332204776540346502333-301577889799887788999 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 57650678750588620113443222044204788735422110036554322479967878999998999999999999 Q gi|254780616|r 162 TSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILE 241 (294) Q Consensus 162 ~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alle 241 (294) ++.|.++++|+|+|+||+|+|+++|+|+++++||+++... ....+.|+++| ++++|++|+|.|++++||+|++| T Consensus 151 ~~~~~~~~~d~v~iiyn~f~~~~~q~~~~~~llP~~~~~~-----~~~~~~~~~~~-~~~il~~l~~~yl~~~l~~a~~e 224 (278) T 2hld_G 151 LSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQ-----SPSFGKFEIDT-DANVPRDLFEYTLANQMLTAMAQ 224 (278) T ss_dssp HHTSCGGGCSCEEEEEEEESSSSCEEEEEEECCCHHHHHT-----CTTGGGSCCCC-SSCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCC-----CCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9987446752104552112443345606764021000113-----65544332253-20038999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999989999999999999998988988999998525319 Q gi|254780616|r 242 NKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294) Q Consensus 242 s~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294) |++|||+|||+||++|||||+|++++|+++|||+||++||+||+||||||||| T Consensus 225 s~~sE~~aR~~aM~~At~Na~~~i~~L~~~yNk~RQ~~IT~El~EIvsGaeal 277 (278) T 2hld_G 225 GYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277 (278) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999899979999999999999999998899999999889864 No 2 >>2ck3_G ATP synthase gamma chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (G:) Probab=100.00 E-value=0 Score=520.93 Aligned_cols=272 Identities=28% Similarity=0.426 Sum_probs=249.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 88799999999875689999999999999999999999830236999999999997301575442100024433343255 Q gi|254780616|r 2 TSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLL 81 (294) Q Consensus 2 ~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (294) +||++|++||+|+++|+|||+||||||++|++|+|+++++.+||++.+.+++.+.. ++.+ .+.++.+| T Consensus 1 asLk~lk~ri~sv~~i~kIt~aMkmva~~kl~k~~~~~~~~~~y~~~~~~~~~~~~-----------~~~~-~~~~~~l~ 68 (272) T 2ck3_G 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKAD-----------IKTP-EDKKKHLI 68 (272) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------------------CC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC-----------CHHC-CCCCCCEE T ss_conf 98699999999987999999999999999999999999832757988688651542-----------0101-34565116 Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 31146424420011479999999876532038850388870403798510233320111114776640368899999765 Q gi|254780616|r 82 VICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQI 161 (294) Q Consensus 82 IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l 161 (294) |+|||||||||+||++++|.+++.+++...+++++.+++||+||.++|.+++.+....+....+.+ ++..+..++..+ T Consensus 69 IvitSd~GlcG~~Ns~i~k~~~~~i~~~~~~~~~~~~i~iG~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~ 146 (272) T 2ck3_G 69 IGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRR--PPTFGDASVIAL 146 (272) T ss_dssp CCBCCSCCCSSSSHHHHC------------------CCCBSHHHHHHC----------CBCSCSSS--CCCHHHHHHHHH T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEEECCCCCC--CCHHHHHHHHHH T ss_conf 998668987665400499999998765404786038975142024566530353000110234457--733788899999 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 57650678750588620113443222044204788735422110036554322479967878999998999999999999 Q gi|254780616|r 162 TSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILE 241 (294) Q Consensus 162 ~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alle 241 (294) ...|..+++|+|+++||+|+|+++|+|.+++++|+++. +....+|+|||+++++++.|+|.|+.+.||+|++| T Consensus 147 ~~~~~~~~~~~v~ivyn~~~~~~~~~~~~~~ilP~~~~-------~~~~~~~~~ep~~~~~l~~li~~yl~~~l~~al~e 219 (272) T 2ck3_G 147 ELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTI-------SSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 219 (272) T ss_dssp HC----------CCCCCEECSSSCEECC---------------------------------------HHHHHHHHHHHHH T ss_pred HHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCH-------HHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99876642110167751555530012457633555641-------22100111034506678889999998999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999989999999999999998988988999998525319 Q gi|254780616|r 242 NKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294) Q Consensus 242 s~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294) |.+|||++||+||++|||||+|++++|+++|||+||+.||+||+||||||||| T Consensus 220 s~~sE~~aR~~AM~~A~~na~e~i~~L~~~~nr~RQ~~IT~El~eIisGaeal 272 (272) T 2ck3_G 220 STTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272 (272) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 89999999999999999849999999999999999999999999998788439 No 3 >>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} (G:) Probab=100.00 E-value=0 Score=541.80 Aligned_cols=285 Identities=33% Similarity=0.533 Sum_probs=260.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE Q ss_conf 98879999999987568999999999999999999999983023699999999999730157544210002443334325 Q gi|254780616|r 1 MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYL 80 (294) Q Consensus 1 M~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (294) ||||++|++||+|+++|+|||+||+|||++|++|+|++++..+||+..+.+++.+++.. ..+..+|+...++. ++.+ T Consensus 1 M~~lk~ik~ri~si~~i~kIt~aMk~ia~skl~k~~~~~~~~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l 77 (286) T 2qe7_G 1 MQGMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAG--TKDFSHPMLEARPV-KKTG 77 (286) T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSSSSSSSSTTCC----------------CCSSCSCCCC-SSCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCC-CCEE T ss_conf 99779999999998689999999999999999999999997132999999999999974--63533420014567-7448 Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 53114642442001147999999987653203885038887040379851023332011111477664036889999976 Q gi|254780616|r 81 LVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQ 160 (294) Q Consensus 81 ~IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 160 (294) ||+|||||||||+||++++|.+.+++++...++.++.+++||+||.+++.+++.+....+....+ .++|..+..+.+. T Consensus 78 ~IvitSdrGlCG~~N~~i~k~~~~~~~~~~~~~~~~~li~iG~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~ 155 (286) T 2qe7_G 78 YMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGRDFFKKRGYPVVEEVTGISD--TPSLTEIQDIAQS 155 (286) T ss_dssp CCCCCCTTCCCTHHHHHHHTGGGTTTTSSCTTSSCCCCCCCSHHHHHHHHSSSSCCSCCCSCCCS--SCCSTTTHHHHHH T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHH T ss_conf 99996797655641058999999987766403641256422103788876211147766520121--0328999999999 Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55765067875058862011344322204420478873542211003655432247996787899999899999999999 Q gi|254780616|r 161 ITSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL 240 (294) Q Consensus 161 l~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~all 240 (294) +++.|.++++|+|+++||+|+|+++|+|.++++||++.... ..+..+.|.|||++++++++|+|.|+.+.||+|++ T Consensus 156 i~~~~~~~~~~~v~ivyn~~~~~~~~~~~~~~llP~~~~~~----~~~~~~~~~~ep~~~~il~~l~~~yl~~~l~~~l~ 231 (286) T 2qe7_G 156 AIGMFADETFDKLTIFYNEFVSPIVQRPVEKQLLPLTSEEV----LDGPVSAYEYEPDSESVLEVLLPKYAETLIYSALL 231 (286) T ss_dssp HHHHHSSSSCSCCCCCCCCCSBTTBCCCCCCCCSSCCC---------------------------CCCTTSSHHHHTTTT T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCHHHEECCCCHHHCCC----CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99875216787337886303345430110000342111001----24776661117888999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999989999999999999998988988999998525319 Q gi|254780616|r 241 ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294 (294) Q Consensus 241 es~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl 294 (294) ||++|||+|||+||++||+||+|++++|+++|||+||++||+||+||||||||| T Consensus 232 es~~sE~~aRm~aM~~At~na~~~i~~L~~~yNr~RQ~~IT~El~EIisGaeal 285 (286) T 2qe7_G 232 DAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANAL 285 (286) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCC------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999989999999999999999999999999999989863 No 4 >>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} (G:) Probab=100.00 E-value=0 Score=404.38 Aligned_cols=230 Identities=23% Similarity=0.426 Sum_probs=207.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH Q ss_conf 99999999999999999999983023699999999999730157544210002443334325531146424420011479 Q gi|254780616|r 19 KITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQI 98 (294) Q Consensus 19 KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~~Ns~i 98 (294) |||+||||||+||+||+|+++++++||++.+.+++.+++... .+..+|++.+++.+ +.++|+|||||||||+||++| T Consensus 1 KITkAMkmVA~sKlrk~~~~~~~~~~Y~~~i~~~~~~i~~~~--~~~~~~~~~~~~~~-~~~~ivitSDrGLCG~fN~~i 77 (230) T 1fs0_G 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGN--LEYKHPYLEDRDVK-RVGYLVVSTDRGLCGGLNINL 77 (230) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCGGGSCCCCS-EEEEEEECCSSSCSTTHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCC-EEEEEEEECCCCCCCHHHHHH T ss_conf 967888999999999999999850769999999999997307--65444212578886-289999937986651543999 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC Q ss_conf 99999987653203885038887040379851023332011111477664036889999976557650678750588620 Q gi|254780616|r 99 IRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYS 178 (294) Q Consensus 99 ~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~~~~~~~d~v~iiYn 178 (294) +|.+.++++++..+++++.+++||+||.++|++++.+....+....+. ++|..+..|++.+++.|.++++|+|+|+|| T Consensus 78 ~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~d~i~iiy~ 155 (230) T 1fs0_G 78 FKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDN--PSLSELIGPVKVMLQAYDEGRLDKLYIVSN 155 (230) T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTC--CCSHHHHHHHHHHHHHHHTTSCSCEEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 999999987650169627999843410766743287146652256656--108999999999988775378208999941 Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11344322204420478873542211003655432247996787899999899999999999999999999999999 Q gi|254780616|r 179 EFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENKASEVGARITAMD 255 (294) Q Consensus 179 ~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alles~aSE~aaRm~AM~ 255 (294) +|+|+++|+|.++++||+++..+. ...+..++|+|||+++++|++|+|+|+++.||+|++||++|||+|||+||+ T Consensus 156 ~f~s~~~q~~~~~~llP~~~~~~~--~~~~~~~~~~~Ep~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AMe 230 (230) T 1fs0_G 156 KFINTMSQVPTISQLLPLPASDDD--DLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230 (230) T ss_dssp EEEETTEEEEEEEEEESCC---------CCCSCCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCCCCCEEEEEECCCCCCCCC--CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 111466664676540177643323--345688884547899999999999999999999999999999999999768 No 5 >>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} (C:498-587) Probab=65.09 E-value=3.5 Score=20.76 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=17.2 Q ss_pred EEEECCCCH-HHHHHHHHHHHHHHH Q ss_conf 553114642-442001147999999 Q gi|254780616|r 80 LLVICTAEK-GLCGGFNAQIIRFAR 103 (294) Q Consensus 80 ~~IvitSDr-GLCG~~Ns~i~k~~~ 103 (294) ++| ||.|| ||||++|=-=.|.+. T Consensus 20 VCv-vtPeR~~lCGaisWlD~kAa~ 43 (90) T 1oao_C 20 VCI-VTPERVGLCGAVSWLDAKASY 43 (90) T ss_dssp CEE-EBTTBCCTTSCCCHHHHHHHH T ss_pred EEE-ECCCCCCCCCCCCHHHHHHHH T ss_conf 489-789876556531113105565 No 6 >>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} (A:129-241,A:317-406) Probab=52.43 E-value=8.1 Score=18.40 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=23.3 Q ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH Q ss_conf 100024433343255311464244200114799 Q gi|254780616|r 67 SPFVRGTGKDKVYLLVICTAEKGLCGGFNAQII 99 (294) Q Consensus 67 ~~~~~~~~~~~~~~~IvitSDrGLCG~~Ns~i~ 99 (294) .|++.+-+.. ..-+|.-.+|..||.+||.-|. T Consensus 106 Rpfl~G~k~~-iR~~v~~~~~~~L~~AYn~cv~ 137 (203) T 2d0t_A 106 RIYLSGWKPS-VREFVLSKGDAGLREAYDACVK 137 (203) T ss_dssp HHHTCCBSCC-HHHHHHTTCCHHHHHHHHHHHH T ss_pred CCEEEEECCC-HHHHHHHCCCHHHHHHHHHHHH T ss_conf 1057776444-7889882588899999999999 No 7 >>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum} (A:) Probab=49.91 E-value=5.8 Score=19.33 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=26.7 Q ss_pred EEECCCCHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHH Q ss_conf 5311464244--2001147999999987653203885038887040379851 Q gi|254780616|r 81 LVICTAEKGL--CGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLR 130 (294) Q Consensus 81 ~IvitSDrGL--CG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~ 130 (294) ++++++|+|+ ||.+|-..+.++ .++...+.|=+-.+-+- T Consensus 32 Ll~i~~~~G~imCGaLdV~~~ekl-----------g~~A~rv~GV~TiedlL 72 (102) T 1qw2_A 32 LLFIKGSKGYAXCGYLNXETSNKV-----------GDIAVRVXGVKTLDDXL 72 (102) T ss_dssp EEEEECSSCEEECTTCCHHHHHHT-----------TCCEEECCSCCSHHHHH T ss_pred EEEEECCCCEEEECCCCHHHHHHC-----------CCCEEEEECCCCHHHHH T ss_conf 999982884899742348888625-----------87149997105599984 No 8 >>1u55_A Heme-based methyl-accepting chemotaxis protein; H-NOX domain, oxygen sensor, signal transduction, signaling protein; HET: HEM; 1.77A {Thermoanaerobacter tengcongensis} (A:) Probab=39.55 E-value=24 Score=15.40 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=32.8 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 157544210002443334325531146424420011479999999876 Q gi|254780616|r 60 EHFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIK 107 (294) Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~~Ns~i~k~~~~~i~ 107 (294) ..+.+...|-+.-...+...+.+...|.||||.=+ ..+++.+-++.. T Consensus 107 ~~~p~~~~Psf~~~~~~~~~l~l~Y~S~R~l~~~~-~Gli~g~A~~f~ 153 (188) T 1u55_A 107 KMIKGATPPRLIAKPVAKDAIEMEYVSKRKMYDYF-LGLIEGSSKFFK 153 (188) T ss_dssp TTSTTCCCCBCCEEEEETTEEEEEEEETTCCHHHH-HHHHHHHHHHHT T ss_pred HHCCCCCCCEEEEEECCCCEEEEEEEECCCHHHHH-HHHHHHHHHHHC T ss_conf 72889889847999778998999999678858899-999999999959 No 9 >>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A (B:) Probab=31.28 E-value=32 Score=14.59 Aligned_cols=20 Identities=30% Similarity=0.705 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99989889889999985253 Q gi|254780616|r 273 NRQRQMRITTELIEIIAGAE 292 (294) Q Consensus 273 Nk~RQ~~IT~El~EIisGae 292 (294) |-.|.-++|..|.||.||-. T Consensus 7 nls~rlkvts~lfdimsgqt 26 (31) T 2p1l_B 7 NLSRRLKVTGDLFDIMSGQT 26 (31) T ss_dssp HHHHHHHHHHHHHHHTTC-- T ss_pred CHHHHHHHHHHHHHHHCCCC T ss_conf 34555545888888863886 No 10 >>2pk8_A Uncharacterized protein PF0899; structural genomics, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} (A:) Probab=29.62 E-value=35 Score=14.39 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCC Q ss_conf 4799999998765320388503888704037985102 Q gi|254780616|r 96 AQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKE 132 (294) Q Consensus 96 s~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~ 132 (294) -.+.....+.+.+++.+|-+..++.+|.-++.|++.. T Consensus 16 irIl~~iEekinELk~dG~ePDiiL~G~eayef~~~~ 52 (103) T 2pk8_A 16 IRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNL 52 (103) T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHH T ss_conf 9999999999999986589987799858999999999 No 11 >>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus} (A:) Probab=24.09 E-value=25 Score=15.36 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999898 Q gi|254780616|r 267 NLVLSYNRQRQM 278 (294) Q Consensus 267 ~L~l~~Nk~RQ~ 278 (294) +++.+||++||- T Consensus 57 k~kkLyNqar~K 68 (79) T 2k47_A 57 RYKKLYNQARVK 68 (79) T ss_dssp HHHTCHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 799999999988 No 12 >>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding protein, DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli B} (A:1-88) Probab=21.13 E-value=24 Score=15.37 Aligned_cols=13 Identities=23% Similarity=0.779 Sum_probs=9.4 Q ss_pred EEEECCCCHHHHH Q ss_conf 5531146424420 Q gi|254780616|r 80 LLVICTAEKGLCG 92 (294) Q Consensus 80 ~~IvitSDrGLCG 92 (294) -++|..|+||+|. T Consensus 26 ~~lvA~T~~GIC~ 38 (88) T 1sfe_A 26 RCLVAESERGICA 38 (88) T ss_dssp EEEEEECSSSEEE T ss_pred EEEEEEECCEEEE T ss_conf 8999997890699 Done!