HHSEARCH alignment of GI: 254780616 and SCOP domain: d2jdig1

Alignment
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=0  Score=543.54  Aligned_cols=272  Identities=29%  Similarity=0.454  Sum_probs=237.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             88799999999875689999999999999999999999830236999999999997301575442100024433343255
Q gi|254780616|r    2 TSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKVYLL   81 (294)
Q Consensus         2 ~~lk~ik~RI~sv~~~~KITkaMkmVA~skl~ka~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (294)
                      |||+|||+||+||++|+||||||+|||+|||||+|++++++|||+.....++.+            +.+..+...++.++
T Consensus         1 A~Lkeik~RI~Sv~~t~kITkAMkmVAasKlrkaq~~~~~~r~Y~~~~~~~~~~------------~~~~~~~~~~~~l~   68 (272)
T d2jdig1           1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEK------------ADIKTPEDKKKHLI   68 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------------------CC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC------------CCCHHCCCCCCCEE
T ss_conf             986999999999879999999999999999999999998427658886886505------------32010134565116


Q ss_pred             EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             31146424420011479999999876532038850388870403798510233320111114776640368899999765
Q gi|254780616|r   82 VICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQI  161 (294)
Q Consensus        82 IvitSDrGLCG~~Ns~i~k~~~~~i~~~~~~~~~~~l~~vGkKg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l  161 (294)
                      |||||||||||+||++|+|.+.+.+.+...++.++.++.+|+||.+++.+.+.......+.......+++..+..+...+
T Consensus        69 IvitSDrGLcG~fN~~iik~~~~~i~~~~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  148 (272)
T d2jdig1          69 IGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALEL  148 (272)
T ss_dssp             CCBCCSCCCSTTHHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99865777777764218999999988752168722898504302445553035212332200577775067789999999


Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57650678750588620113443222044204788735422110036554322479967878999998999999999999
Q gi|254780616|r  162 TSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILE  241 (294)
Q Consensus       162 ~~~~~~~~~d~v~iiYn~f~s~~~q~p~~~~llP~~~~~~~~~~~~~~~~~~~~Ep~~~~il~~l~~~yl~~~l~~alle  241 (294)
                      ..  ..+++|+|+|+||+|+|+++|.|..++++|+++.       +.....|.|||+++++|+.|+|.|++++||+|++|
T Consensus       149 ~~--~~~~~d~v~i~y~~f~~~~~q~p~~~~l~p~~~~-------~~~~~~~~~~~~~~~vl~~l~~~yl~~~ly~a~~e  219 (272)
T d2jdig1         149 LN--SGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTI-------SSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE  219 (272)
T ss_dssp             ------------CCCCCEECSSSCEECC---------------------------------------HHHHHHHHHHHHH
T ss_pred             HH--HHHHCCEEEEEEECCCCCCCCCCEEECCCCCCCC-------CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98--6642340379961245554122046416666630-------00000000134437899999999899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999989999999999999998988988999998525319
Q gi|254780616|r  242 NKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV  294 (294)
Q Consensus       242 s~aSE~aaRm~AM~~At~Na~~~i~~L~l~~Nk~RQ~~IT~El~EIisGaeAl  294 (294)
                      |+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||||||||
T Consensus       220 s~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv~GaeAl  272 (272)
T d2jdig1         220 STTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL  272 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             89999999999999999849999999999999999999999999999778439


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]