RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit
gamma [Candidatus Liberibacter asiaticus str. psy62]
(294 letters)
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis,
F1-ATPase, single particle analysis, thermoalkaliphilic,
hydrolase; 3.06A {Bacillus SP} (G:)
Length = 286
Score = 208 bits (531), Expect = 6e-55
Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 9/294 (3%)
Query: 1 MTSLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGE 60
M ++E K RI SVK T++IT+AM++++ KLRRA+E +NA Y IK+
Sbjct: 1 MQGMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAA-- 58
Query: 61 HFQEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLI 120
+++ P + K ++ T+++GL G +NA I+R I+E E +
Sbjct: 59 GTKDFSHPML-EARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFA 117
Query: 121 IGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEF 180
+GRKG + +K ++ + +S + IA+ +F FD Y+EF
Sbjct: 118 VGRKGRDFFKKRGYPVVEEVTGISDT--PSLTEIQDIAQSAIGMFADETFDKLTIFYNEF 175
Query: 181 KSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIIL 240
S I Q P+ +++P+ E+ +S Y YE SVL+ ++ + + ++ +L
Sbjct: 176 VSPIVQRPVEKQLLPLT----SEEVLDGPVSAYEYEPDSESVLEVLLPKYAETLIYSALL 231
Query: 241 ENKASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294
+ KASE GAR+TAM NAT NA +M++ L L +NR RQ IT E+ EI+AGA +
Sbjct: 232 DAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANAL 285
>2hld_G ATP synthase gamma chain, mitochondrial; ATP phosphorylase
(H+ transporting), F1FO, F1- ATPase, hydrolase; HET:
ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_G (G:)
Length = 278
Score = 203 bits (518), Expect = 2e-53
Identities = 71/292 (24%), Positives = 138/292 (47%), Gaps = 16/292 (5%)
Query: 3 SLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHF 62
+LKE + R+ S+K +KIT+ M++++ T+L +A++A +A + F+ ++
Sbjct: 2 TLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFY------KNA 55
Query: 63 QEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIG 122
+ L+V T++KGLCG ++Q+ + R + + ++ IG
Sbjct: 56 ETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVR----RHLNDQPNADIVTIG 111
Query: 123 RKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKS 182
K L + + I SI K F ++ IA ++ S+ + + Y++ S
Sbjct: 112 DKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVS 171
Query: 183 IIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILEN 242
+ P I +Q + ++ +V D+ ++++++ + +
Sbjct: 172 SLSFEPSEKPIFNAK-----TIEQSPSFGKFEIDTD-ANVPRDLFEYTLANQMLTAMAQG 225
Query: 243 KASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294
A+E+ AR AMDNA++NAG M++ + YNR RQ IT EL++II GA +
Sbjct: 226 YAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277
>2ck3_G ATP synthase gamma chain; ATP phosphorylase, ATP
phosphorylase (H+ transporting), F1FO ATP synthase,
F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A
{Bos taurus} (G:)
Length = 272
Score = 199 bits (508), Expect = 3e-52
Identities = 77/292 (26%), Positives = 142/292 (48%), Gaps = 21/292 (7%)
Query: 3 SLKEFKSRIHSVKETQKITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHF 62
+LK+ R+ S+K QKIT++M++++ K RA+ ++ A Y +
Sbjct: 2 TLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYE-------- 53
Query: 63 QEYPSPFVRGTGKDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIG 122
++ K +L++ ++++GLCG ++ + + + A GKE+K++ +G
Sbjct: 54 ----KADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVG 109
Query: 123 RKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKS 182
K L + S + + + ++ F + L + FD I++ F+S
Sbjct: 110 DKIRSILHRTHSDQFLVTFKEVGRRPPTF--GDASVIALELLNSGYEFDEGSIIFNRFRS 167
Query: 183 IIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILEN 242
+I I +D E S+ Y+ VL + S+++ +++ + E+
Sbjct: 168 VISYKTEEKPIFSLDTISSAE-------SMSIYDDIDADVLRNYQEYSLANIIYYSLKES 220
Query: 243 KASEVGARITAMDNATRNAGQMVDNLVLSYNRQRQMRITTELIEIIAGAEVV 294
SE AR+TAMDNA++NA +M+D L L++NR RQ IT ELIEII+GA +
Sbjct: 221 TTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase;
2.10A {Escherichia coli} (G:)
Length = 230
Score = 157 bits (397), Expect = 2e-39
Identities = 55/236 (23%), Positives = 116/236 (49%), Gaps = 7/236 (2%)
Query: 19 KITEAMQLISVTKLRRAKEAIQNASSYQFHIKDFFMKCVVGEHFQEYPSPFVRGTGKDKV 78
KIT+AM++++ +K+R++++ + + Y ++ + EY P++ +V
Sbjct: 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGH--LAHGNLEYKHPYLEDRDVKRV 58
Query: 79 YLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMII 138
LV+ + ++GLCGG N + + +K + +G + L +IG KG +++
Sbjct: 59 GYLVV-STDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVA 117
Query: 139 DSIELSSKKGVDFVQAHGIARQITSLFTSNVFDLCFFIYSEFKSIIQQIPIISKIIPVDW 198
+ + G + + + D + + ++F + + Q+P IS+++P+
Sbjct: 118 QVTGMGDNP--SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPA 175
Query: 199 SQDLEQKQQDILSVYRYESTLYSVLDDIVLRSISSRVFWIILENKASEVGARITAM 254
S D + K + Y YE ++LD ++ R + S+V+ ++EN ASE AR+ AM
Sbjct: 176 SDDDDLKHKS--WDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAM 229
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 33.6 bits (76), Expect = 0.033
Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 39/162 (24%)
Query: 72 GTGKDKVYLLVICTAEKGLCGGFNAQIIRFARD---RIKEFIAE-GKEIKLLIIGRKGYE 127
GTGK + L + + A + +R+ +I + + E GK ++
Sbjct: 168 GTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS 227
Query: 128 GLRKEFSSMIIDSIELSSKKGVDFVQA------HGIARQITSLFTSN----VFDLCFFIY 177
+ K V + R L + V D +
Sbjct: 228 VPKGA-------------KIDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNML 272
Query: 178 SEFKSIIQQIPIISKIIPVD---------WSQDLEQKQQDIL 210
+ + + Q I ++P + +S+ +E+ +
Sbjct: 273 -DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFA 313
>3bow_A Calpain-2 catalytic subunit; cysteine protease, calcium,
inhibitor, cell membrane, cytoplasm, hydrolase,
membrane, protease, thiol protease; 2.40A {Rattus
norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
(A:1-209)
Length = 209
Score = 29.0 bits (64), Expect = 0.76
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 173 CFFIYSEFKSIIQQIPIISKIIPVDWSQDLEQKQQDILSVYRYESTLYSVLDD------- 225
+ + + S+ I+++++P+D S ++Y + V+DD
Sbjct: 105 SWLL-AAIASLTLNEEILARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPTKDG 163
Query: 226 --IVLRSISSRVFWIILENKA 244
+ + S FW L KA
Sbjct: 164 ELLFVHSAEGSEFWSALLEKA 184
>1vco_A CTP synthetase; tetramer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus}
(A:1-280)
Length = 280
Score = 27.9 bits (62), Expect = 1.6
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 75 KDKVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFI---AEGKEIKLLII 121
+VYL VI +G Q+I D IKE I AE ++ +++++
Sbjct: 101 TGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVV 150
>1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase;
1.0A {Aspergillus oryzae} (A:)
Length = 177
Score = 27.2 bits (60), Expect = 2.9
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 29 VTKLRRAKEAIQNASSYQFHIKDFFMKC 56
T+L A+ NA SY + +KC
Sbjct: 151 ATQLSAQD-ALNNADSYALYANAIELKC 177
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR
repeat, PUR domain, whirly fold, DNA binding protein,
RNA binding protein; 2.10A {Drosophila melanogaster}
(A:)
Length = 146
Score = 26.0 bits (57), Expect = 5.8
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 105 RIKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMI 137
R+ + I G + + +G R + ++
Sbjct: 108 RVSQTITRGGPRSQIALPAQGMIEFRDALTDLL 140
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase
(ADP-forming), cytidine 5'-triphosphate synthase,
ammonia lyase; 2.30A {Escherichia coli} (A:1-269)
Length = 269
Score = 25.2 bits (55), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 77 KVYLLVICTAEKGLCGGFNAQIIRFARDRIKEFIAEGKE 115
++Y V+ +G G Q+I + IKE + EG E
Sbjct: 94 RIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGE 132
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176,
structural genomics, secsg, PSI, protein structure
initiative; 2.90A {Pyrococcus furiosus} (A:)
Length = 103
Score = 25.2 bits (55), Expect = 9.7
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 125 GYEGLRKEFSSMIIDSIELSSKKGVDFVQA 154
E L K I + + +G F +A
Sbjct: 21 EEENLAKAIERFITLTHGIEKTRGEAFAKA 50
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.137 0.381
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,104,779
Number of extensions: 91803
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 16
Length of query: 294
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 206
Effective length of database: 1,981,209
Effective search space: 408129054
Effective search space used: 408129054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.8 bits)