HHsearch alignment for GI: 254780617 and conserved domain: COG0055
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=637.56 Aligned_cols=438 Identities=25% Similarity=0.400 Sum_probs=397.2
Q ss_pred EEEEEEEEECCEEEEECCCC----CCCCCEEEECCC-----EEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEE
Q ss_conf 03589998275899975888----773747995798-----189999205985999980586686789888977987886
Q gi|254780617|r 27 EIGRVLSIGDGIARVYGLNN----IRAGEMVQFSHG-----VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDV 97 (509)
Q Consensus 27 ~~G~V~~V~~giv~v~GL~~----a~~GElv~~~~g-----~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~v 97 (509)
T Consensus 2 ~~G~vvqv~g~VvdV~-F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~V 80 (468)
T COG0055 2 NKGKVVQVIGPVVDVE-FPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISV 80 (468)
T ss_pred CCCEEEEEEEEEEEEE-ECCCCCCCHHHHHHEECCCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCCEEE
T ss_conf 8756999982179998-058666720434526435775257530687738883899996375671037477507996687
Q ss_pred ECCHHHHHCCCCHHHCCCCCCCCCCCC--CCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 679469830003002314466444544--410010135773112660014441602331011115683365524778861
Q gi|254780617|r 98 PVGLELLGRVVDALGNPIDGKGPIKCE--QRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGK 175 (509)
Q Consensus 98 pvG~~lLGRVvD~lG~PlDg~g~i~~~--~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GK 175 (509)
T Consensus 81 PVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGK 160 (468)
T COG0055 81 PVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGK 160 (468)
T ss_pred ECCHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCC
T ss_conf 52632212310204773466688875555020125799835540773044330736899841114686444423677562
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 15899999998863024667876069999516776789999985114674211589972887888999998876666667
Q gi|254780617|r 176 TSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGE 255 (509)
Q Consensus 176 t~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAE 255 (509)
T Consensus 161 TVl~~ELI~Nia~~h~-------g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AE 233 (468)
T COG0055 161 TVLIQELINNIAKEHG-------GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAE 233 (468)
T ss_pred EEEHHHHHHHHHHHCC-------CEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHH
T ss_conf 0109999999999749-------868997135321115778999986388773269996057998641455112331999
Q ss_pred HHHCC-CCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 54204-68847996164789999987545303787543337520012467888875045445887356753100367664
Q gi|254780617|r 256 YFRDN-GYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDV 334 (509)
Q Consensus 256 yfr~~-G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~ 334 (509)
T Consensus 234 yfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~----GSITSiQavyvPaDDl 309 (468)
T COG0055 234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKK----GSITSVQAVYVPADDL 309 (468)
T ss_pred HHHCCCCCEEEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCEEEEEEEEECCCCC
T ss_conf 864003875899842556776231389998456964145674067788889999753788----8668899998613237
Q ss_pred CCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-CC
Q ss_conf 43114668854061699615012210266543344412203-4343898877556788879988767879876-338-99
Q gi|254780617|r 335 SAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVG-SAAQVKAMKQVSGAVKGELAQYREMSSFSKF-SSD-LD 411 (509)
Q Consensus 335 ~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~-~~~~~~~~~~~a~~lr~~laqy~Ele~f~~f-gsd-lD 411 (509)
T Consensus 310 TDPapattFaHLDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELs 389 (468)
T COG0055 310 TDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELS 389 (468)
T ss_pred CCCCHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf 89525556551344135637678668876658443422015864145899999999999999989999999983832128
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999996699988748899999999986698066798999999999999997415999998873
Q gi|254780617|r 412 SSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILEDIRK 485 (509)
Q Consensus 412 ~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ld~i~v~~I~~fe~~l~~~l~~~~~ei~~~I~~ 485 (509)
T Consensus 390 eedk~~V~rArki~~FlSQpF~--------vAE~FTg~pG~~V~l~-dti~~fk~Il~G~yd~~pE~aF~~vG~ 454 (468)
T COG0055 390 EEDKLTVARARKIQRFLSQPFF--------VAEVFTGSPGKYVPLK-DTIRGFKRILEGKYDHLPEQAFYMVGS 454 (468)
T ss_pred HHHHHHHHHHHHHHHHHCCCCH--------HHHHCCCCCCEEEEHH-HHHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf 6678999999999998558620--------1210048996164489-999999998478766698889731174