HHsearch alignment for GI: 254780617 and conserved domain: COG0055

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=637.56  Aligned_cols=438  Identities=25%  Similarity=0.400  Sum_probs=397.2

Q ss_pred             EEEEEEEEECCEEEEECCCC----CCCCCEEEECCC-----EEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEE
Q ss_conf             03589998275899975888----773747995798-----189999205985999980586686789888977987886
Q gi|254780617|r   27 EIGRVLSIGDGIARVYGLNN----IRAGEMVQFSHG-----VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDV   97 (509)
Q Consensus        27 ~~G~V~~V~~giv~v~GL~~----a~~GElv~~~~g-----~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~v   97 (509)
T Consensus         2 ~~G~vvqv~g~VvdV~-F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~V   80 (468)
T COG0055           2 NKGKVVQVIGPVVDVE-FPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISV   80 (468)
T ss_pred             CCCEEEEEEEEEEEEE-ECCCCCCCHHHHHHEECCCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCCEEE
T ss_conf             8756999982179998-058666720434526435775257530687738883899996375671037477507996687


Q ss_pred             ECCHHHHHCCCCHHHCCCCCCCCCCCC--CCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf             679469830003002314466444544--410010135773112660014441602331011115683365524778861
Q gi|254780617|r   98 PVGLELLGRVVDALGNPIDGKGPIKCE--QRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGK  175 (509)
Q Consensus        98 pvG~~lLGRVvD~lG~PlDg~g~i~~~--~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GK  175 (509)
T Consensus        81 PVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGK  160 (468)
T COG0055          81 PVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGK  160 (468)
T ss_pred             ECCHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCC
T ss_conf             52632212310204773466688875555020125799835540773044330736899841114686444423677562


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             15899999998863024667876069999516776789999985114674211589972887888999998876666667
Q gi|254780617|r  176 TSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGE  255 (509)
Q Consensus       176 t~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAE  255 (509)
T Consensus       161 TVl~~ELI~Nia~~h~-------g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AE  233 (468)
T COG0055         161 TVLIQELINNIAKEHG-------GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAE  233 (468)
T ss_pred             EEEHHHHHHHHHHHCC-------CEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHH
T ss_conf             0109999999999749-------868997135321115778999986388773269996057998641455112331999


Q ss_pred             HHHCC-CCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             54204-68847996164789999987545303787543337520012467888875045445887356753100367664
Q gi|254780617|r  256 YFRDN-GYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDV  334 (509)
Q Consensus       256 yfr~~-G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~  334 (509)
T Consensus       234 yfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~----GSITSiQavyvPaDDl  309 (468)
T COG0055         234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKK----GSITSVQAVYVPADDL  309 (468)
T ss_pred             HHHCCCCCEEEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCEEEEEEEEECCCCC
T ss_conf             864003875899842556776231389998456964145674067788889999753788----8668899998613237


Q ss_pred             CCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-CC
Q ss_conf             43114668854061699615012210266543344412203-4343898877556788879988767879876-338-99
Q gi|254780617|r  335 SAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVG-SAAQVKAMKQVSGAVKGELAQYREMSSFSKF-SSD-LD  411 (509)
Q Consensus       335 ~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~-~~~~~~~~~~~a~~lr~~laqy~Ele~f~~f-gsd-lD  411 (509)
T Consensus       310 TDPapattFaHLDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELs  389 (468)
T COG0055         310 TDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELS  389 (468)
T ss_pred             CCCCHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf             89525556551344135637678668876658443422015864145899999999999999989999999983832128


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999996699988748899999999986698066798999999999999997415999998873
Q gi|254780617|r  412 SSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILEDIRK  485 (509)
Q Consensus       412 ~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ld~i~v~~I~~fe~~l~~~l~~~~~ei~~~I~~  485 (509)
T Consensus       390 eedk~~V~rArki~~FlSQpF~--------vAE~FTg~pG~~V~l~-dti~~fk~Il~G~yd~~pE~aF~~vG~  454 (468)
T COG0055         390 EEDKLTVARARKIQRFLSQPFF--------VAEVFTGSPGKYVPLK-DTIRGFKRILEGKYDHLPEQAFYMVGS  454 (468)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCH--------HHHHCCCCCCEEEEHH-HHHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf             6678999999999998558620--------1210048996164489-999999998478766698889731174