HHsearch alignment for GI: 254780617 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=96.88 E-value=0.016 Score=37.42 Aligned_cols=118 Identities=20% Similarity=0.196 Sum_probs=67.0
Q ss_pred CHHHHHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 00144416023310111--1568336552477886115899999998863024667876069999516776789999985
Q gi|254780617|r 142 VCEPLSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKA 219 (509)
Q Consensus 142 i~~~l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~ 219 (509)
T Consensus 38 ~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~--------g~~a~fIDt-E~~l~p~r~~~l 108 (279)
T COG0468 38 DIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP--------GGKAAFIDT-EHALDPERAKQL 108 (279)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--------CCEEEEEEC-CCCCCHHHHHHH
T ss_conf 36601655055787746886553589984688765466899998886537--------980899958-999899999998
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHH
Q ss_conf 11467421158997288788899999887666666754204688479961647899999
Q gi|254780617|r 220 LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAY 278 (509)
Q Consensus 220 l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~ 278 (509)
T Consensus 109 ~~~~--~d~--l~v~~~~~~e~q~~i~~~~~~~~~~------~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 109 GVDL--LDN--LLVSQPDTGEQQLEIAEKLARSGAE------KIDLLVVDSVAALVRAE 157 (279)
T ss_pred HHHH--HCC--EEEECCCCHHHHHHHHHHHHHHCCC------CCCEEEEECCCCCCHHH
T ss_conf 8754--215--3686689779999999999875468------87889982574346365