HHsearch alignment for GI: 254780617 and conserved domain: COG1158
>COG1158 Rho Transcription termination factor [Transcription].
Probab=99.97 E-value=3.9e-29 Score=230.53 Aligned_cols=236 Identities=19% Similarity=0.251 Sum_probs=189.4
Q ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 02331011115683365524778861158999999988630246678760699995167767899999851146742115
Q gi|254780617|r 150 IKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYS 229 (509)
Q Consensus 150 I~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~t 229 (509)
T Consensus 161 ~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq-~I-----A~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~ge------ 228 (422)
T COG1158 161 TRVIDLISPIGKGQRGLIVAPPKAGKTTLLQ-NI-----ANAITTNHPECELIVLLIDERPEEVTDMQRSVKGE------ 228 (422)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCHHHHH-HH-----HHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCE------
T ss_conf 6676652656788465686698787338999-99-----99986379964999999347806777788752406------
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89972887888999998876666667542046884799616478999998754530378754333752001246788887
Q gi|254780617|r 230 IVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERA 309 (509)
Q Consensus 230 vvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa 309 (509)
T Consensus 229 -ViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~~PKrFFGAA 306 (422)
T COG1158 229 -VVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAA 306 (422)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEC-CCCCHHHHCCCHHHHHHH
T ss_conf -986448886054689999999999988871786899965677899885366799777404-873856604835542122
Q ss_pred HHCCCCCCCCCEEEEEEEECC-CCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 504544588735675310036-7664431146688540616996150122102665433444122034343898877556
Q gi|254780617|r 310 AKMSDALGAGSLTALPVIETQ-VNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSG 388 (509)
Q Consensus 310 ~~~~~~~g~GSiT~~~~v~~~-~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~ 388 (509)
T Consensus 307 RN---IEeGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRkEeLLl~~~~l~k~w 383 (422)
T COG1158 307 RN---IEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMW 383 (422)
T ss_pred HC---CCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCCCCCHHHHCCCHHHHHHHH
T ss_conf 05---545863411111244147751120253425777507886013444124530203567761576548999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 78887998876787
Q gi|254780617|r 389 AVKGELAQYREMSS 402 (509)
Q Consensus 389 ~lr~~laqy~Ele~ 402 (509)
T Consensus 384 ~lRr~l~~md~~~a 397 (422)
T COG1158 384 VLRRILSPMDEIDA 397 (422)
T ss_pred HHHHHHCCCCHHHH
T ss_conf 99997367874899