HHsearch alignment for GI: 254780617 and conserved domain: PRK05688

>PRK05688 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=964.15  Aligned_cols=435  Identities=26%  Similarity=0.381  Sum_probs=413.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEECC--C-----EEEEEEEECCCEEEE
Q ss_conf             988889999999999842455542010358999827589997588877374799579--8-----189999205985999
Q gi|254780617|r    1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSH--G-----VYGMALNLEVDNVGV   73 (509)
Q Consensus         1 m~~~~~eis~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~--g-----~~G~Vi~l~~d~v~i   73 (509)
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~p~~~GrV~~v~G~~ie~~G~~-~~iG~~c~i~~~~~~~~~~v~aEVVgf~~~~v~l   79 (451)
T PRK05688          1 MRLERTSFAKRLEGYAEAISLPAQPVVEGRLLRMVGLTLEAEGLR-AAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVYL   79 (451)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECEEEEEEECC-CCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEE
T ss_conf             987789999999999972577677700369999967499998258-8747847998689887754689992254997999


Q ss_pred             EEECCCCCCCCCCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHH
Q ss_conf             98058668678988897798788667946983000300231446644454441001013577311266001444160233
Q gi|254780617|r   74 VILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAI  153 (509)
Q Consensus        74 ~~l~~~~gI~~G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~I  153 (509)
T Consensus        80 ~p~g~~~Gi~~G~~V~~~g~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~~~~~p~~~~~p~pl~R~~i~epl~TGIraI  159 (451)
T PRK05688         80 MPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRDPISEPLDVGIRSI  159 (451)
T ss_pred             EECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCEECCCEEE
T ss_conf             98878778899999996899877775825358888877642689999898734556689988355178786200384688


Q ss_pred             HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             10111156833655247788611589999999886302466787606999951677678999998511467421158997
Q gi|254780617|r  154 DSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVV  233 (509)
Q Consensus       154 D~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~  233 (509)
T Consensus       160 D~l~pigrGQR~gIfggsGvGKS~L-l~~i~r~~~---------adv~Vi~lIGERgrEv~efi~~~l~~~~~~~svvV~  229 (451)
T PRK05688        160 NGLLTVGRGQRLGLFAGTGVGKSVL-LGMMTRFTE---------ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVA  229 (451)
T ss_pred             ECCCCCCCCCEEEECCCCCCCHHHH-HHHHHHHHC---------CCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             4546724675642104889868999-999988527---------986999961277599999999985156743058983


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             28878889999988766666675420468847996164789999987545303787543337520012467888875045
Q gi|254780617|r  234 ASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS  313 (509)
Q Consensus       234 a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~  313 (509)
T Consensus       230 atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~-  308 (451)
T PRK05688        230 SPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNA-  308 (451)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC-
T ss_conf             3888987999999987655899998679825999705577788888899875899876687844887737888641379-


Q ss_pred             CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             44588735675310036766443114668854061699615012210266543344412203434389887755678887
Q gi|254780617|r  314 DALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGE  393 (509)
Q Consensus       314 ~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~  393 (509)
T Consensus       309 -~~g~GSITal~tVlv~gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm~~i~~~~h~~~a~~~r~~  387 (451)
T PRK05688        309 -EPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQL  387 (451)
T ss_pred             -CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf             -9999220164677503887677733445655062599848788669999828752665423333129999999999999


Q ss_pred             HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99887678798763---38998999999999999999669998874889999999998
Q gi|254780617|r  394 LAQYREMSSFSKFS---SDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAG  448 (509)
Q Consensus       394 laqy~Ele~f~~fg---sdlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~  448 (509)
T Consensus       388 la~Y~e~~dLi~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~l  445 (451)
T PRK05688        388 WSRYQQSRDLISVGAYVAGGDPETDLAIARQPHLVQFLRQGLRENVSLAESREQLAAL  445 (451)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             9986888999998584569999999999869999998189999995999999999998