HHsearch alignment for GI: 254780617 and conserved domain: PRK05688
>PRK05688 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=964.15 Aligned_cols=435 Identities=26% Similarity=0.381 Sum_probs=413.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEECC--C-----EEEEEEEECCCEEEE
Q ss_conf 988889999999999842455542010358999827589997588877374799579--8-----189999205985999
Q gi|254780617|r 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSH--G-----VYGMALNLEVDNVGV 73 (509)
Q Consensus 1 m~~~~~eis~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~--g-----~~G~Vi~l~~d~v~i 73 (509)
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~p~~~GrV~~v~G~~ie~~G~~-~~iG~~c~i~~~~~~~~~~v~aEVVgf~~~~v~l 79 (451)
T PRK05688 1 MRLERTSFAKRLEGYAEAISLPAQPVVEGRLLRMVGLTLEAEGLR-AAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVYL 79 (451)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECEEEEEEECC-CCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEE
T ss_conf 987789999999999972577677700369999967499998258-8747847998689887754689992254997999
Q ss_pred EEECCCCCCCCCCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHH
Q ss_conf 98058668678988897798788667946983000300231446644454441001013577311266001444160233
Q gi|254780617|r 74 VILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAI 153 (509)
Q Consensus 74 ~~l~~~~gI~~G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~I 153 (509)
T Consensus 80 ~p~g~~~Gi~~G~~V~~~g~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~~~~~p~~~~~p~pl~R~~i~epl~TGIraI 159 (451)
T PRK05688 80 MPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLNRDPISEPLDVGIRSI 159 (451)
T ss_pred EECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCEECCCEEE
T ss_conf 98878778899999996899877775825358888877642689999898734556689988355178786200384688
Q ss_pred HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 10111156833655247788611589999999886302466787606999951677678999998511467421158997
Q gi|254780617|r 154 DSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVV 233 (509)
Q Consensus 154 D~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~ 233 (509)
T Consensus 160 D~l~pigrGQR~gIfggsGvGKS~L-l~~i~r~~~---------adv~Vi~lIGERgrEv~efi~~~l~~~~~~~svvV~ 229 (451)
T PRK05688 160 NGLLTVGRGQRLGLFAGTGVGKSVL-LGMMTRFTE---------ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVA 229 (451)
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHH-HHHHHHHHC---------CCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 4546724675642104889868999-999988527---------986999961277599999999985156743058983
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 28878889999988766666675420468847996164789999987545303787543337520012467888875045
Q gi|254780617|r 234 ASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS 313 (509)
Q Consensus 234 a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~ 313 (509)
T Consensus 230 atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~- 308 (451)
T PRK05688 230 SPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNA- 308 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC-
T ss_conf 3888987999999987655899998679825999705577788888899875899876687844887737888641379-
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 44588735675310036766443114668854061699615012210266543344412203434389887755678887
Q gi|254780617|r 314 DALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGE 393 (509)
Q Consensus 314 ~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~ 393 (509)
T Consensus 309 -~~g~GSITal~tVlv~gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm~~i~~~~h~~~a~~~r~~ 387 (451)
T PRK05688 309 -EPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQL 387 (451)
T ss_pred -CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHH
T ss_conf -9999220164677503887677733445655062599848788669999828752665423333129999999999999
Q ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99887678798763---38998999999999999999669998874889999999998
Q gi|254780617|r 394 LAQYREMSSFSKFS---SDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAG 448 (509)
Q Consensus 394 laqy~Ele~f~~fg---sdlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~ 448 (509)
T Consensus 388 la~Y~e~~dLi~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~l 445 (451)
T PRK05688 388 WSRYQQSRDLISVGAYVAGGDPETDLAIARQPHLVQFLRQGLRENVSLAESREQLAAL 445 (451)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9986888999998584569999999999869999998189999995999999999998