HHsearch alignment for GI: 254780617 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=90.44 E-value=1.4 Score=23.36 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=55.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH-HH
Q ss_conf 36552477886115899999998863024667876069999516776789999985114674211589972887888-99
Q gi|254780617|r 164 RELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA-PM 242 (509)
Q Consensus 164 R~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~-~~ 242 (509)
T Consensus 2 rI~IiG~sGsGKSTlAr-~L~~~~~ip--~~~LD---~l~w~p~w~~~~~~e~~~~~~~~~~~~-~WIiDGny~~~~~~~ 74 (171)
T PRK07261 2 KIAIIGYSGSGKSTLAR-FLGQHYNCP--VLHLD---QLHFSSNWQERDDDDMIADISNFLLKQ-DWIIEGNYSNCLYEE 74 (171)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHCCC--EEEEC---CEEECCCCEECCHHHHHHHHHHHHHCC-CEEEECCCCCHHHHH
T ss_conf 89998899986899999-999987979--79702---278889998888999999999998489-879947851247776
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCC-----CCCCCCCCCC
Q ss_conf 99988766666675420468847996164789999987545303-----7875433375
Q gi|254780617|r 243 QLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLR-----RPPGREAYPG 296 (509)
Q Consensus 243 r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~-----~pp~~~gyp~ 296 (509)
T Consensus 75 rl~~---------------aD-~iI~Ld~p~~~~l~rvikR~l~~~~~~r~~m~~g~~E 117 (171)
T PRK07261 75 RMAE---------------AD-QIIFLNFSRFNCLYRAFKRYLKYRGKTRPSMAENCPE 117 (171)
T ss_pred HHHH---------------CC-EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 7977---------------99-9999858499999999999999827758765789934