HHsearch alignment for GI: 254780617 and conserved domain: PRK07261

>PRK07261 topology modulation protein; Provisional.
Probab=90.44  E-value=1.4  Score=23.36  Aligned_cols=110  Identities=14%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH-HH
Q ss_conf             36552477886115899999998863024667876069999516776789999985114674211589972887888-99
Q gi|254780617|r  164 RELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA-PM  242 (509)
Q Consensus       164 R~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~-~~  242 (509)
T Consensus         2 rI~IiG~sGsGKSTlAr-~L~~~~~ip--~~~LD---~l~w~p~w~~~~~~e~~~~~~~~~~~~-~WIiDGny~~~~~~~   74 (171)
T PRK07261          2 KIAIIGYSGSGKSTLAR-FLGQHYNCP--VLHLD---QLHFSSNWQERDDDDMIADISNFLLKQ-DWIIEGNYSNCLYEE   74 (171)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHHHCCC--EEEEC---CEEECCCCEECCHHHHHHHHHHHHHCC-CEEEECCCCCHHHHH
T ss_conf             89998899986899999-999987979--79702---278889998888999999999998489-879947851247776


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCC-----CCCCCCCCCC
Q ss_conf             99988766666675420468847996164789999987545303-----7875433375
Q gi|254780617|r  243 QLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLR-----RPPGREAYPG  296 (509)
Q Consensus       243 r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~-----~pp~~~gyp~  296 (509)
T Consensus        75 rl~~---------------aD-~iI~Ld~p~~~~l~rvikR~l~~~~~~r~~m~~g~~E  117 (171)
T PRK07261         75 RMAE---------------AD-QIIFLNFSRFNCLYRAFKRYLKYRGKTRPSMAENCPE  117 (171)
T ss_pred             HHHH---------------CC-EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             7977---------------99-9999858499999999999999827758765789934