HHsearch alignment for GI: 254780617 and conserved domain: PRK07721
>PRK07721 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=909.80 Aligned_cols=423 Identities=26% Similarity=0.407 Sum_probs=398.2
Q ss_pred HHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEEC--C--C--EEEEEEEECCCEEEEEEECCCCCCCCCCE
Q ss_conf 9984245554201035899982758999758887737479957--9--8--18999920598599998058668678988
Q gi|254780617|r 14 KRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFS--H--G--VYGMALNLEVDNVGVVILGSYKEISEGDI 87 (509)
Q Consensus 14 ~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~--~--g--~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~ 87 (509)
T Consensus 3 ~~~~~~~~~~~~~~~GrV~~I~G~lIea~g~-~~~iGelc~I~~~~~~g~~i~aEVVgf~~~~v~l~p~~~~~GI~~G~~ 81 (435)
T PRK07721 3 QLIDLIETLDPYKRYGKVKRVIGLMIESKGP-ESSIGDVCYIHTKGKGGKKIKAEVVGFKDENILLMPYLEAANIAPGSL 81 (435)
T ss_pred HHHHHHHCCCCCCCCEEEEEEECEEEEEEEC-CCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCE
T ss_conf 7999986279752312899998638999957-888434179996479997899999987698899998768889999999
Q ss_pred EEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEE
Q ss_conf 89779878866794698300030023144664445444100101357731126600144416023310111156833655
Q gi|254780617|r 88 VKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELI 167 (509)
Q Consensus 88 V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I 167 (509)
T Consensus 82 V~~~g~~~~vpvg~~lLGRV~d~lG~PiDg~~~~~~~~~~~i~~~~pnp~~R~~i~e~l~TGIraID~l~tigkGQRigI 161 (435)
T PRK07721 82 VEATGEPLRVKVGSGLIGQVVDAFGEPLDGSALPKGLAPVSTDQSPPNPMKRPPIREKMEVGVRAIDSLLTVGKGQRVGI 161 (435)
T ss_pred EEECCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEE
T ss_conf 99589976677275322451045654358988888765352558997850147988630378565226476035754100
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 24778861158999999988630246678760699995167767899999851146742115899728878889999988
Q gi|254780617|r 168 IGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAP 247 (509)
Q Consensus 168 ~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap 247 (509)
T Consensus 162 f~gsGvGKs~L-l~~iar~~~---------adv~V~~liGeR~rEv~efie~~l~~~~l~rsvvv~atsd~p~~~R~~a~ 231 (435)
T PRK07721 162 FAGSGVGKSTL-MGMIARQTS---------ADLNVIALIGERGREVREFIERDLGEEGLKRSIVVVATSDQPALMRIKGA 231 (435)
T ss_pred CCCCCCCHHHH-HHHHHHHHC---------CCEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 26899878999-999988744---------88258999332028999999975221555323999943889999999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf 76666667542046884799616478999998754530378754333752001246788887504544588735675310
Q gi|254780617|r 248 FAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVI 327 (509)
Q Consensus 248 ~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v 327 (509)
T Consensus 232 ~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~----~~GSIT~i~~V 307 (435)
T PRK07721 232 YTATAIAEYFRDKGQNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN----ESGTITAFYTV 307 (435)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC----CCCCEEEEEEE
T ss_conf 99888999999679978995163889999999999854899986677845998878888851379----99745777545
Q ss_pred ECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03676644311466885406169961501221026654334441220343438988775567888799887678798763
Q gi|254780617|r 328 ETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFS 407 (509)
Q Consensus 328 ~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fg 407 (509)
T Consensus 308 ~~~gdD~~dPi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~~r~~la~y~e~~~li~~g 387 (435)
T PRK07721 308 LVDGDDMNEPIADTVRGILDGHFVLDRALANKGQFPAVNVLKSISRVMSNIATKEHKEAANRFRELLSTYQNSEDLINIG 387 (435)
T ss_pred ECCCCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04798666771687877716179986889866999980886166543222302999999999999999889999999974
Q ss_pred C---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 3---8998999999999999999669998874889999999998669
Q gi|254780617|r 408 S---DLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISG 451 (509)
Q Consensus 408 s---dlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G 451 (509)
T Consensus 388 ~y~~g~d~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~l~~~ 434 (435)
T PRK07721 388 AYKRGSSREIDEAIQFYPQLISFLKQEVDEKATLEESIQALKQLTGR 434 (435)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 87679998899999868999998489999998999999999998677