HHsearch alignment for GI: 254780617 and conserved domain: PRK07960
>PRK07960 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=902.65 Aligned_cols=435 Identities=24% Similarity=0.322 Sum_probs=408.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEEC--CC-----EEEEEEEECCCEEEE
Q ss_conf 98888999999999984245554201035899982758999758887737479957--98-----189999205985999
Q gi|254780617|r 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFS--HG-----VYGMALNLEVDNVGV 73 (509)
Q Consensus 1 m~~~~~eis~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~--~g-----~~G~Vi~l~~d~v~i 73 (509)
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~GrV~~v~G~~iea~G~-~a~iG~~C~I~~~~g~~~~~v~AEVVGF~~~~~~L 79 (455)
T PRK07960 1 MTTRLTRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGL-QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFL 79 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECC-CCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEE
T ss_conf 95379999999999999983699761466899997359999677-88979989997079987771679999876995899
Q ss_pred EEECCCCCCCCCCEEEE-------CCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHH
Q ss_conf 98058668678988897-------79878866794698300030023144664445444100101357731126600144
Q gi|254780617|r 74 VILGSYKEISEGDIVKR-------TGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPL 146 (509)
Q Consensus 74 ~~l~~~~gI~~G~~V~~-------tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l 146 (509)
T Consensus 80 mp~~~~~Gi~~G~~V~~~~~~~~~~~~~~~vpVg~~lLGRVvd~lG~PlDg~~~~~~~~~~pi~~~~pnp~~R~~i~epL 159 (455)
T PRK07960 80 MPLEEVEGILPGARVYARNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTTETGALITPPFNPLQRTPIEHVL 159 (455)
T ss_pred EECCCCCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf 64797665799999972467655578888720384630635189998268999999876153558997822117878723
Q ss_pred HCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf 41602331011115683365524778861158999999988630246678760699995167767899999851146742
Q gi|254780617|r 147 STGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGAL 226 (509)
Q Consensus 147 ~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~ 226 (509)
T Consensus 160 ~TGIraID~llpigrGQRigIfagsGvGKs~L-l~~iar~~~a---------dv~Vi~lIGERgrEv~efi~~~l~~~~~ 229 (455)
T PRK07960 160 DTGVRAINALLTVGRGQRMGLFAGSGVGKSVL-LGMMARYTRA---------DVIVVGLIGERGREVKDFIENILGAEGR 229 (455)
T ss_pred CCCCEEEECCCCCCCCCEEECCCCCCCCHHHH-HHHHHHHHCC---------CEEEEEEECEEHHHHHHHHHHHHCCCCC
T ss_conf 26844440336714787763248998849999-9999886089---------8589972040628999999997514774
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11589972887888999998876666667542046884799616478999998754530378754333752001246788
Q gi|254780617|r 227 SYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLL 306 (509)
Q Consensus 227 ~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ 306 (509)
T Consensus 230 ~rsvvv~atsd~~p~~r~~aa~~a~aiAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~gepP~~~GYppsvf~~l~~L~ 309 (455)
T PRK07960 230 ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV 309 (455)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 21279984266684888878999999999998558737999736478888888888763799865577830677737899
Q ss_pred HHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 88750454458873567531003676644311466885406169961501221026654334441220343438988775
Q gi|254780617|r 307 ERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQV 386 (509)
Q Consensus 307 ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~ 386 (509)
T Consensus 310 ERaG~~--~~~~GSITa~~tVl~~gdD~~dPi~d~~~silDGhivLsr~la~~g~yPAIDvl~S~SR~m~~i~~~~h~~~ 387 (455)
T PRK07960 310 ERAGNG--ISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYAR 387 (455)
T ss_pred HHCCCC--CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHH
T ss_conf 850478--999811378889963688867871676454212599982899967999970865047550400079999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5678887998876787987633---8998999999999999999669998874889999999998
Q gi|254780617|r 387 SGAVKGELAQYREMSSFSKFSS---DLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAG 448 (509)
Q Consensus 387 a~~lr~~laqy~Ele~f~~fgs---dlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~ 448 (509)
T Consensus 388 a~~~r~~la~y~~~~dli~iG~Y~~G~d~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~t~~~L~~l 452 (455)
T PRK07960 388 VRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEAFLQQGIFERADWEDSLQGLELI 452 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999986186589986799999868999998479988986999999999987