HHsearch alignment for GI: 254780617 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=91.54 E-value=0.3 Score=28.19 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 68336552477886115899999998863024667876069999516776789999985
Q gi|254780617|r 161 RGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKA 219 (509)
Q Consensus 161 rGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~ 219 (509)
T Consensus 44 ~~~~l~l~G~~G~GKTHLL-qA~~~~~~~~-----~~--~~~yl~~~~~~~~~~~~l~~ 94 (235)
T PRK08084 44 HSGYIYLWGREGAGRSHLL-HAACAELSQR-----GD--AVGYVPLDKRAWFVPEVLEG 94 (235)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHCC-----CC--CEEEEEHHHHHHHHHHHHHH
T ss_conf 9876999899998889999-9999999707-----98--57998779866517999987