HHsearch alignment for GI: 254780617 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=97.54 E-value=0.0064 Score=40.25 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=99.4
Q ss_pred CCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 11266001444160233101111568336552477886115899999998863024667876069999516776789999
Q gi|254780617|r 137 IQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARF 216 (509)
Q Consensus 137 ~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~ 216 (509)
T Consensus 8 ~~~d~ld~~lggGip---------~gs~~li~G~~GtGKsi~~~~~~~~~l~--------~g~~~~yis~e~t~~~~i~q 70 (230)
T PRK08533 8 LDGDELHKRLGGGIP---------FGSIILIEGDESTGKSILSQRLAYGFLQ--------NGYSVSYVSSQLTTTEFIKQ 70 (230)
T ss_pred CCCHHHHHHHCCCCC---------CCCEEEEECCCCCCHHHHHHHHHHHHHH--------CCCEEEEEEECCCHHHHHHH
T ss_conf 571357887178988---------9848999868998789999999999987--------89869999943899999999
Q ss_pred HHHH-------CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 9851-------146742115899728878889999988766666675420468847996164789999987545303787
Q gi|254780617|r 217 VKAL-------EDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPP 289 (509)
Q Consensus 217 ~~~l-------~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp 289 (509)
T Consensus 71 m~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~~~~L~-----~ll~~~~~~~~dv-IIIDSlS~l~~~~----------- 133 (230)
T PRK08533 71 MMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRDFLD-----KLMNTRRFYEKDV-VIIDSLSSLVSRD----------- 133 (230)
T ss_pred HHHCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHH-----HHHHHHHHCCCCE-EEEECCHHHHHCC-----------
T ss_conf 9986998179975796799961343354045789999-----9973266437989-9990531885167-----------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCC
Q ss_conf 543337520012467888875045445887356753100367664431146688540616996150122102
Q gi|254780617|r 290 GREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGI 361 (509)
Q Consensus 290 ~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~ 361 (509)
T Consensus 134 ---~~~~~~~~~~~-~lk~l~s~------gk-tIi--lTv~p~~~~e~~l~~lrs~aDv~i~L~~~~vGg~~ 192 (230)
T PRK08533 134 ---ASEVQIRDLMA-FFKRISSL------NK-VII--LTANPKELPESVLLILRTASTILIRLEVKVFGGDL 192 (230)
T ss_pred ---CCHHHHHHHHH-HHHHHHHC------CC-EEE--EEECCCCCCHHHHHHHHEEEEEEEEEEEEECCCEE
T ss_conf ---77899999999-99999858------98-899--99563313624544204104899998736109889