HHsearch alignment for GI: 254780617 and conserved domain: PRK08533

>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=97.54  E-value=0.0064  Score=40.25  Aligned_cols=178  Identities=16%  Similarity=0.156  Sum_probs=99.4

Q ss_pred             CCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             11266001444160233101111568336552477886115899999998863024667876069999516776789999
Q gi|254780617|r  137 IQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARF  216 (509)
Q Consensus       137 ~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~  216 (509)
T Consensus         8 ~~~d~ld~~lggGip---------~gs~~li~G~~GtGKsi~~~~~~~~~l~--------~g~~~~yis~e~t~~~~i~q   70 (230)
T PRK08533          8 LDGDELHKRLGGGIP---------FGSIILIEGDESTGKSILSQRLAYGFLQ--------NGYSVSYVSSQLTTTEFIKQ   70 (230)
T ss_pred             CCCHHHHHHHCCCCC---------CCCEEEEECCCCCCHHHHHHHHHHHHHH--------CCCEEEEEEECCCHHHHHHH
T ss_conf             571357887178988---------9848999868998789999999999987--------89869999943899999999


Q ss_pred             HHHH-------CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf             9851-------146742115899728878889999988766666675420468847996164789999987545303787
Q gi|254780617|r  217 VKAL-------EDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPP  289 (509)
Q Consensus       217 ~~~l-------~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp  289 (509)
T Consensus        71 m~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~~~~L~-----~ll~~~~~~~~dv-IIIDSlS~l~~~~-----------  133 (230)
T PRK08533         71 MMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRDFLD-----KLMNTRRFYEKDV-VIIDSLSSLVSRD-----------  133 (230)
T ss_pred             HHHCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHH-----HHHHHHHHCCCCE-EEEECCHHHHHCC-----------
T ss_conf             9986998179975796799961343354045789999-----9973266437989-9990531885167-----------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCC
Q ss_conf             543337520012467888875045445887356753100367664431146688540616996150122102
Q gi|254780617|r  290 GREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGI  361 (509)
Q Consensus       290 ~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~  361 (509)
T Consensus       134 ---~~~~~~~~~~~-~lk~l~s~------gk-tIi--lTv~p~~~~e~~l~~lrs~aDv~i~L~~~~vGg~~  192 (230)
T PRK08533        134 ---ASEVQIRDLMA-FFKRISSL------NK-VII--LTANPKELPESVLLILRTASTILIRLEVKVFGGDL  192 (230)
T ss_pred             ---CCHHHHHHHHH-HHHHHHHC------CC-EEE--EEECCCCCCHHHHHHHHEEEEEEEEEEEEECCCEE
T ss_conf             ---77899999999-99999858------98-899--99563313624544204104899998736109889