HHsearch alignment for GI: 254780617 and conserved domain: PRK08927
>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=914.34 Aligned_cols=427 Identities=26% Similarity=0.382 Sum_probs=400.8
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCC-CCCCCCEEEECC--C--EEEEEEEECCCEEEEEEECCCCCCCC
Q ss_conf 999999842455542010358999827589997588-877374799579--8--18999920598599998058668678
Q gi|254780617|r 10 DILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLN-NIRAGEMVQFSH--G--VYGMALNLEVDNVGVVILGSYKEISE 84 (509)
Q Consensus 10 ~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~-~a~~GElv~~~~--g--~~G~Vi~l~~d~v~i~~l~~~~gI~~ 84 (509)
T Consensus 3 ~~~~~~~~~~~~---~~~~GrV~~V~G~~vev~g~~~~~~iG~~c~I~~~~g~~i~aEVvgf~~~~~~l~~~~~t~Gi~~ 79 (441)
T PRK08927 3 KALAAQIGDIDG---VNIYGRVVGVRGLLVEVAGPIHAMSVGARIVVETGDGREIPCEVIGFRGDRALLMPFGPLEGVRR 79 (441)
T ss_pred HHHHHHHHCCCC---EEEEEEEEEEECEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCCCC
T ss_conf 899999844897---15778999997708999805777775888999908998899999988598799998888778899
Q ss_pred CCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCC-CCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCC
Q ss_conf 98889779878866794698300030023144664445-44410010135773112660014441602331011115683
Q gi|254780617|r 85 GDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIK-CEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQ 163 (509)
Q Consensus 85 G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~-~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQ 163 (509)
T Consensus 80 G~~V~~tg~~~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQ 159 (441)
T PRK08927 80 GCRAVIANAAAQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGPPLDLGVRALNTFLTCCRGQ 159 (441)
T ss_pred CCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999899998777786642878776711158999888876004024789684661777763103601565330020364
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
Q ss_conf 36552477886115899999998863024667876069999516776789999985114674211589972887888999
Q gi|254780617|r 164 RELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQ 243 (509)
Q Consensus 164 R~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r 243 (509)
T Consensus 160 RigIfagsGvGKs~Ll-~~i~r~~~---------adv~VialIGeRgrEv~efi~~~l~~~~l~rsvvV~atsd~p~~~R 229 (441)
T PRK08927 160 RLGIFAGSGVGKSVLL-SMLARNTD---------ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMR 229 (441)
T ss_pred EEEECCCCCCCHHHHH-HHHHHHCC---------CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHH
T ss_conf 6663168999878999-99986416---------7737875226518999999998720245224589996378987887
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 99887666666754204688479961647899999875453037875433375200124678888750454458873567
Q gi|254780617|r 244 LLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTA 323 (509)
Q Consensus 244 ~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~ 323 (509)
T Consensus 230 ~~a~~~A~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~---~~~GSIT~ 306 (441)
T PRK08927 230 RQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPG---LGEGTITG 306 (441)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC---CCCCEEEC
T ss_conf 999987558999999779967998346028889999999755899987787861787717888761357---89950303
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53100367664431146688540616996150122102665433444122034343898877556788879988767879
Q gi|254780617|r 324 LPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSF 403 (509)
Q Consensus 324 ~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f 403 (509)
T Consensus 307 ~~tVl~~gdD~~dPi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~edl 386 (441)
T PRK08927 307 LFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPAELPLVRRARQLMATYADMEEL 386 (441)
T ss_pred EEEEEECCCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03576127876787245446563647999687986699998087625644240002799999999999999988899999
Q ss_pred HHHHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 87633---89989999999999999996699988748899999999986698
Q gi|254780617|r 404 SKFSS---DLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGISGC 452 (509)
Q Consensus 404 ~~fgs---dlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ 452 (509)
T Consensus 387 i~~G~y~~g~d~~~D~ai~~~~~i~~fL~Q~~~e~~~~~e~~~~L~~~~~g~ 438 (441)
T PRK08927 387 IRLGAYRAGSDPEVDEAIRLHPPLEAFLRQGKDEATSLAEGYAQLAQILGGP 438 (441)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9973864799989999998679999984899889989999999999986787