HHsearch alignment for GI: 254780617 and conserved domain: PRK09099
>PRK09099 type III secretion system ATPase; Provisional.
Probab=100.00 E-value=0 Score=943.95 Aligned_cols=431 Identities=28% Similarity=0.447 Sum_probs=408.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCEEEECC--C---EEEEEEEECCCEEEEEEECCC
Q ss_conf 89999999999842455542010358999827589997588877374799579--8---189999205985999980586
Q gi|254780617|r 5 AAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSH--G---VYGMALNLEVDNVGVVILGSY 79 (509)
Q Consensus 5 ~~eis~~l~~~i~~~~~~~~~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~--g---~~G~Vi~l~~d~v~i~~l~~~ 79 (509)
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~G~V~~v~g~~i~~~G~~-a~iGelc~i~~~~g~~~~~aEVvgf~~~~~~l~p~~~~ 80 (441)
T PRK09099 2 LAELSRLADAMERELAALAAVRRTGKVLEVIGTLLRVSGLD-VTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGEL 80 (441)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEECC-CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEECCCC
T ss_conf 66899999999987504775304669999978199998178-88788699984899711025899986898999988786
Q ss_pred CCCCCCCEEEECCCEEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCC
Q ss_conf 68678988897798788667946983000300231446644454441001013577311266001444160233101111
Q gi|254780617|r 80 KEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPI 159 (509)
Q Consensus 80 ~gI~~G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pi 159 (509)
T Consensus 81 ~gi~~G~~V~~tg~~~~VpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pi 160 (441)
T PRK09099 81 GGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGRGPLDCDTLVPVIAAPPDPMSRRMIEAPLPTGVRIVDGLMTL 160 (441)
T ss_pred CCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 67889999997899637874704148885677655689978887658875167988200257787412785622366780
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 56833655247788611589999999886302466787606999951677678999998511467421158997288788
Q gi|254780617|r 160 GRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDP 239 (509)
Q Consensus 160 grGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~ 239 (509)
T Consensus 161 grGQR~gIf~gsGvGKstLl-~~iar~~---------~~dv~V~~lIGeRgrEv~efi~~~~~~~~l~~svvv~atsd~~ 230 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLM-GMFARGT---------QCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRS 230 (441)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHH---------CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 34763300158988789999-9898751---------3686168863721389999999976245632017986158899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89999988766666675420468847996164789999987545303787543337520012467888875045445887
Q gi|254780617|r 240 APMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAG 319 (509)
Q Consensus 240 ~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~G 319 (509)
T Consensus 231 ~~~R~~a~~~a~aiAEyfrd~Gk~VLl~~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~l~ERag~~~----~G 306 (441)
T PRK09099 231 SIERAKAAYAATAIAEYFRDRGKRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGE----HG 306 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----CC
T ss_conf 88999987750157889986698189970767799999999998657999856677209988789887403789----98
Q ss_pred CEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 35675310036766443114668854061699615012210266543344412203434389887755678887998876
Q gi|254780617|r 320 SLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYRE 399 (509)
Q Consensus 320 SiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~E 399 (509)
T Consensus 307 SITai~tVl~~~dd~~~pi~d~~~si~DGhivLsr~la~~g~yPAIdvl~SvSR~~~~~~~~~~~~~a~~~r~~la~y~e 386 (441)
T PRK09099 307 SITALYTVLAEDDSGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRRLLAKHRE 386 (441)
T ss_pred CEEEEEEEECCCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55344445506887778767877767063899858788669998717741554244344159999999999999998999
Q ss_pred HHHHHHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 78798763---3899899999999999999966999887488999999999866
Q gi|254780617|r 400 MSSFSKFS---SDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGIS 450 (509)
Q Consensus 400 le~f~~fg---sdlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~ 450 (509)
T Consensus 387 ~e~li~~G~y~~G~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~lv~ 440 (441)
T PRK09099 387 VETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQRTDELSDPDATLAALAELVD 440 (441)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 999997368668989789999987899999838998899899999999999851