HHsearch alignment for GI: 254780617 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=98.32  E-value=2.1e-05  Score=58.37  Aligned_cols=70  Identities=27%  Similarity=0.405  Sum_probs=56.5

Q ss_pred             HHHHCCHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             14441602331011--115683365524778861158999999988630246678760699995167767899999851
Q gi|254780617|r  144 EPLSTGIKAIDSLI--PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL  220 (509)
Q Consensus       144 ~~l~TGI~~ID~l~--pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l  220 (509)
T Consensus         4 eRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~-------GE~~lyitl~E~~~~l~~~~~~~   75 (501)
T PRK09302          4 EKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSF-------GEPGVFVTFEESPEDIIRNVASF   75 (501)
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHHHHHC
T ss_conf             4214487115778548988997799983899999999999999998855-------99789998579999999999984