HHsearch alignment for GI: 254780617 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=98.32 E-value=2.1e-05 Score=58.37 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=56.5
Q ss_pred HHHHCCHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 14441602331011--115683365524778861158999999988630246678760699995167767899999851
Q gi|254780617|r 144 EPLSTGIKAIDSLI--PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL 220 (509)
Q Consensus 144 ~~l~TGI~~ID~l~--pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l 220 (509)
T Consensus 4 eRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~-------GE~~lyitl~E~~~~l~~~~~~~ 75 (501)
T PRK09302 4 EKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSF-------GEPGVFVTFEESPEDIIRNVASF 75 (501)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHHHHHC
T ss_conf 4214487115778548988997799983899999999999999998855-------99789998579999999999984