HHsearch alignment for GI: 254780617 and conserved domain: PRK09354

>PRK09354 recA recombinase A; Provisional.
Probab=96.00  E-value=0.049  Score=33.86  Aligned_cols=135  Identities=20%  Similarity=0.313  Sum_probs=78.0

Q ss_pred             HHHHCCHHHHHCCCC---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             144416023310111---15683365524778861158999999988630246678760699995167767899999851
Q gi|254780617|r  144 EPLSTGIKAIDSLIP---IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL  220 (509)
Q Consensus       144 ~~l~TGI~~ID~l~p---igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l  220 (509)
T Consensus        39 ~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iae-a-Qk------~Gg~~a~iDa-E~al-d~~~a~~l  108 (350)
T PRK09354         39 ETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAE-A-QK------AGGTAAFIDA-EHAL-DPVYAKKL  108 (350)
T ss_pred             CEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH-H-HH------CCCCEEEEEE-CCCC-CHHHHHHC
T ss_conf             654477178999875899678708999889877799999999999-9-97------5994799960-0027-98899984


Q ss_pred             CCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             14674-21158997288788899999887666666754204688479961647899999875453037875433375200
Q gi|254780617|r  221 EDRGA-LSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVF  299 (509)
Q Consensus       221 ~~~~~-~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf  299 (509)
T Consensus       109 ---GVd~d~--llv~qpd--~~Eq------al~i~e~Lvrsg~vd~IVvDSVaAL~p-k~Eieg~mg-----d~~vG---  166 (350)
T PRK09354        109 ---GVDIDN--LLVSQPD--TGEQ------ALEIADALVRSGAVDLIVVDSVAALVP-KAEIEGEMG-----DSHVG---  166 (350)
T ss_pred             ---CCCHHH--EEEECCC--HHHH------HHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHCCCC-----CCCHH---
T ss_conf             ---977157--1785686--7999------999999998548841899825334576-888731335-----42263---


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             124678888750
Q gi|254780617|r  300 YLHSRLLERAAK  311 (509)
Q Consensus       300 ~~~s~l~ERa~~  311 (509)
T Consensus       167 -~qARlmSqalR  177 (350)
T PRK09354        167 -LQARLMSQALR  177 (350)
T ss_pred             -HHHHHHHHHHH
T ss_conf             -89999999999