HHsearch alignment for GI: 254780617 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=96.00 E-value=0.049 Score=33.86 Aligned_cols=135 Identities=20% Similarity=0.313 Sum_probs=78.0
Q ss_pred HHHHCCHHHHHCCCC---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 144416023310111---15683365524778861158999999988630246678760699995167767899999851
Q gi|254780617|r 144 EPLSTGIKAIDSLIP---IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL 220 (509)
Q Consensus 144 ~~l~TGI~~ID~l~p---igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l 220 (509)
T Consensus 39 ~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iae-a-Qk------~Gg~~a~iDa-E~al-d~~~a~~l 108 (350)
T PRK09354 39 ETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAE-A-QK------AGGTAAFIDA-EHAL-DPVYAKKL 108 (350)
T ss_pred CEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH-H-HH------CCCCEEEEEE-CCCC-CHHHHHHC
T ss_conf 654477178999875899678708999889877799999999999-9-97------5994799960-0027-98899984
Q ss_pred CCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 14674-21158997288788899999887666666754204688479961647899999875453037875433375200
Q gi|254780617|r 221 EDRGA-LSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVF 299 (509)
Q Consensus 221 ~~~~~-~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf 299 (509)
T Consensus 109 ---GVd~d~--llv~qpd--~~Eq------al~i~e~Lvrsg~vd~IVvDSVaAL~p-k~Eieg~mg-----d~~vG--- 166 (350)
T PRK09354 109 ---GVDIDN--LLVSQPD--TGEQ------ALEIADALVRSGAVDLIVVDSVAALVP-KAEIEGEMG-----DSHVG--- 166 (350)
T ss_pred ---CCCHHH--EEEECCC--HHHH------HHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHCCCC-----CCCHH---
T ss_conf ---977157--1785686--7999------999999998548841899825334576-888731335-----42263---
Q ss_pred HHHHHHHHHHHH
Q ss_conf 124678888750
Q gi|254780617|r 300 YLHSRLLERAAK 311 (509)
Q Consensus 300 ~~~s~l~ERa~~ 311 (509)
T Consensus 167 -~qARlmSqalR 177 (350)
T PRK09354 167 -LQARLMSQALR 177 (350)
T ss_pred -HHHHHHHHHHH
T ss_conf -89999999999