HHsearch alignment for GI: 254780617 and conserved domain: PRK09361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional.
Probab=97.78 E-value=0.00017 Score=51.66 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=66.7
Q ss_pred CHHHHHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC--CHHHHHHHH
Q ss_conf 00144416023310111--15683365524778861158999999988630246678760699995167--767899999
Q gi|254780617|r 142 VCEPLSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQ--KRSSVARFV 217 (509)
Q Consensus 142 i~~~l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGe--r~~ev~~~~ 217 (509)
T Consensus 1 ~~erisTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g--------~~vlYidt-E~~~~er~~qi~ 71 (224)
T PRK09361 1 IEELLPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQG--------KKVIYIDT-EGLSPERFKQIA 71 (224)
T ss_pred CCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--------CCEEEECC-CCCCHHHHHHHH
T ss_conf 985303797899986269988887999989999859999999999999749--------90999678-767889999985
Q ss_pred HHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH
Q ss_conf 85114674211589972887888999998876666667542046884799616478999
Q gi|254780617|r 218 KALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAV 276 (509)
Q Consensus 218 ~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~ 276 (509)
T Consensus 72 ~~-~~~~~~~~i-~~~~~~~~~~~~~------~i~~~~~~~~~-~~~lvVIDSi~~~~~ 121 (224)
T PRK09361 72 GE-DFEELLSNI-IIFEPSSFEEQRE------AIQKAEKIAKE-NVGLIVLDSATSLYR 121 (224)
T ss_pred CC-CHHHHHHCC-EEECCCCHHHHHH------HHHHHHHHHHC-CCCEEEEECCHHHEE
T ss_conf 65-734542061-4724798899999------99999987505-873899962301000