HHsearch alignment for GI: 254780617 and conserved domain: PRK09361

>PRK09361 radB DNA repair and recombination protein RadB; Provisional.
Probab=97.78  E-value=0.00017  Score=51.66  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             CHHHHHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC--CHHHHHHHH
Q ss_conf             00144416023310111--15683365524778861158999999988630246678760699995167--767899999
Q gi|254780617|r  142 VCEPLSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQ--KRSSVARFV  217 (509)
Q Consensus       142 i~~~l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGe--r~~ev~~~~  217 (509)
T Consensus         1 ~~erisTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g--------~~vlYidt-E~~~~er~~qi~   71 (224)
T PRK09361          1 IEELLPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQG--------KKVIYIDT-EGLSPERFKQIA   71 (224)
T ss_pred             CCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--------CCEEEECC-CCCCHHHHHHHH
T ss_conf             985303797899986269988887999989999859999999999999749--------90999678-767889999985


Q ss_pred             HHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH
Q ss_conf             85114674211589972887888999998876666667542046884799616478999
Q gi|254780617|r  218 KALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAV  276 (509)
Q Consensus       218 ~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~  276 (509)
T Consensus        72 ~~-~~~~~~~~i-~~~~~~~~~~~~~------~i~~~~~~~~~-~~~lvVIDSi~~~~~  121 (224)
T PRK09361         72 GE-DFEELLSNI-IIFEPSSFEEQRE------AIQKAEKIAKE-NVGLIVLDSATSLYR  121 (224)
T ss_pred             CC-CHHHHHHCC-EEECCCCHHHHHH------HHHHHHHHHHC-CCCEEEEECCHHHEE
T ss_conf             65-734542061-4724798899999------99999987505-873899962301000