HHsearch alignment for GI: 254780617 and conserved domain: PRK09376

>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=100.00  E-value=5.6e-33  Score=258.45  Aligned_cols=293  Identities=20%  Similarity=0.231  Sum_probs=214.6

Q ss_pred             CCCCCCCEEEECCCEEEEECCHHH--HHCCCCHHHCCC---------CCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHC
Q ss_conf             686789888977987886679469--830003002314---------466444544410010135773112660014441
Q gi|254780617|r   80 KEISEGDIVKRTGRIVDVPVGLEL--LGRVVDALGNPI---------DGKGPIKCEQRSCTEADAPGIIQRQSVCEPLST  148 (509)
Q Consensus        80 ~gI~~G~~V~~tg~~~~vpvG~~l--LGRVvD~lG~Pl---------Dg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~T  148 (509)
T Consensus        90 f~LR~GD~V~G~vR~p--ke~Ery~aLl~V~~VNg~~pe~~~~r~~F~~LTPi~P~erl~LE~------------~~~~~  155 (416)
T PRK09376         90 FNLRTGDTVEGKIRPP--KEGERYFALLKVETVNGEDPEKARNRILFENLTPLYPNERLKLET------------GTEDL  155 (416)
T ss_pred             HCCCCCCEEEEEEECC--CCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHCCCC------------CCCCC
T ss_conf             0998888899988689--888877433776322893989965735401487779722311456------------88765


Q ss_pred             CHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf             60233101111568336552477886115899999998863024667876069999516776789999985114674211
Q gi|254780617|r  149 GIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSY  228 (509)
Q Consensus       149 GI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~  228 (509)
T Consensus       156 s~RiiDL~aPIGkGQRgLIVAPPkaGKT~lLq-~IA~-----aI~~N~Pe~~liVLLIDERPEEVTdm~r~v~~------  223 (416)
T PRK09376        156 STRVIDLVAPIGKGQRGLIVAPPKAGKTVLLQ-NIAN-----SITTNHPEVHLIVLLIDERPEEVTDMQRSVKG------  223 (416)
T ss_pred             CCCCEEEECCCCCCCCCEEECCCCCCHHHHHH-HHHH-----HHHHCCCCEEEEEEEECCCCHHHHHHHHHCCE------
T ss_conf             40021100541358500375699875479999-9999-----99856997199999904893477787750461------


Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58997288788899999887666666754204688479961647899999875453037875433375200124678888
Q gi|254780617|r  229 SIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLER  308 (509)
Q Consensus       229 tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ER  308 (509)
T Consensus       224 -eV~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~ls-GG~D~~Al~~PKrfFGA  301 (416)
T PRK09376        224 -EVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGA  301 (416)
T ss_pred             -EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCHHHHCCCHHHHHH
T ss_conf             -8999779998789999999999999999876997899973157888886234699877544-76577776055676410


Q ss_pred             HHHCCCCCCCCCEEEEEEEECC-CCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf             7504544588735675310036-766443114668854061699615012210266543344412203434389887755
Q gi|254780617|r  309 AAKMSDALGAGSLTALPVIETQ-VNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVS  387 (509)
Q Consensus       309 a~~~~~~~g~GSiT~~~~v~~~-~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a  387 (509)
T Consensus       302 AR---nie~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ldr~la~~RifPAIdi~~SgTRkEelLl~~~e~~~~  378 (416)
T PRK09376        302 AR---NIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKV  378 (416)
T ss_pred             HC---CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHH
T ss_conf             02---677675177877777526862538999985157845999876677578864013335777257653799999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             6788879988767879
Q gi|254780617|r  388 GAVKGELAQYREMSSF  403 (509)
Q Consensus       388 ~~lr~~laqy~Ele~f  403 (509)
T Consensus       379 ~~lRr~l~~~~~~ea~  394 (416)
T PRK09376        379 WILRKILSPMDEVEAM  394 (416)
T ss_pred             HHHHHHHHCCCHHHHH
T ss_conf             9999987159979999