HHsearch alignment for GI: 254780617 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=100.00 E-value=6.1e-40 Score=309.01 Aligned_cols=293 Identities=19% Similarity=0.214 Sum_probs=226.4
Q ss_pred CCCCCCCCEEEECCCEEEEECCHHHHHCCCCHHHCCCCC---------CCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCC
Q ss_conf 668678988897798788667946983000300231446---------64445444100101357731126600144416
Q gi|254780617|r 79 YKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDG---------KGPIKCEQRSCTEADAPGIIQRQSVCEPLSTG 149 (509)
Q Consensus 79 ~~gI~~G~~V~~tg~~~~vpvG~~lLGRVvD~lG~PlDg---------~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TG 149 (509)
T Consensus 55 rf~LR~GD~V~G~iR~--p~~ge-aL~~V~~VNg~~pe~~~~R~~F~~LTPi~P~erl~LE~~------------~~~~s 119 (379)
T PRK12608 55 RFGLRTGDLVEGVIRA--PREKE-TLVRIDSVNGTDPEKLQRRKHFDDLTPLHPEERIVLETG------------SDDLS 119 (379)
T ss_pred HCCCCCCCEEEEEECC--CCCCH-HHEEEHHCCCCCHHHHCCCCCCCCCCCCCCCCEEECCCC------------CCCCC
T ss_conf 5499999989998638--99874-204145238949899557467556877799650440148------------87644
Q ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 02331011115683365524778861158999999988630246678760699995167767899999851146742115
Q gi|254780617|r 150 IKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYS 229 (509)
Q Consensus 150 I~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~t 229 (509)
T Consensus 120 ~RiiDL~aPIGkGQRgLIVAPPkaGKT~LLq-~IA~-----aI~~NhPev~livLLIDERPEEVTdm~r~v~g------- 186 (379)
T PRK12608 120 MRVLDLVAPIGKGQRGLIVAPPRAGKTILLQ-QIAQ-----AVAANHPDIHLMVLLIDERPEEVTDMKRSVKG------- 186 (379)
T ss_pred CCEEEEECCCCCCCCCEEECCCCCCHHHHHH-HHHH-----HHHHCCCCCEEEEEECCCCCHHHHHHHHHCCE-------
T ss_conf 1103100463457401274589865789999-9999-----99857998489999816893588888862370-------
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89972887888999998876666667542046884799616478999998754530378754333752001246788887
Q gi|254780617|r 230 IVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERA 309 (509)
Q Consensus 230 vvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa 309 (509)
T Consensus 187 EVvaSTfD~~~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRAyn~~~~~sGr~ls-gg~d~~al~-~pk~~Fga 264 (379)
T PRK12608 187 EVYASTFDRPYDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARAYNSEVDSSGRTLS-GGVDARALE-RPKRLFGA 264 (379)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCHHHHH-HHHHHHHH
T ss_conf 7999779899899999999999999999876996899965177889987533688886157-786956750-06898531
Q ss_pred HHCCCCCCCCCEEEEEEEECC-CCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 504544588735675310036-7664431146688540616996150122102665433444122034343898877556
Q gi|254780617|r 310 AKMSDALGAGSLTALPVIETQ-VNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSG 388 (509)
Q Consensus 310 ~~~~~~~g~GSiT~~~~v~~~-~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~ 388 (509)
T Consensus 265 ar~--ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r~fPAIdi~~SgTR~EelLl~~~e~~~~~ 342 (379)
T PRK12608 265 ARK--IEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLDSKELEKVR 342 (379)
T ss_pred CCC--CCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHH
T ss_conf 257--778866325666632266643458899963268608997255776788751155457762266548999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 788879988767879
Q gi|254780617|r 389 AVKGELAQYREMSSF 403 (509)
Q Consensus 389 ~lr~~laqy~Ele~f 403 (509)
T Consensus 343 ~lRr~l~~~~~~ea~ 357 (379)
T PRK12608 343 LLRRALASLKPVEAM 357 (379)
T ss_pred HHHHHHCCCCHHHHH
T ss_conf 999986179979999