HHsearch alignment for GI: 254780617 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=96.12 E-value=0.053 Score=33.63 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=47.2
Q ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 11115683365524778861158999999988630246678760699995167767899999851146742115899728
Q gi|254780617|r 156 LIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVAS 235 (509)
Q Consensus 156 l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~ 235 (509)
T Consensus 46 ~i~~~~~~S~Il~GPPGtGKTTLA~-iIA~~t~~~--------F~-~lsAv~sgvkdlr~ii~----------------- 98 (726)
T PRK13341 46 AIKADRVGSLILYGPPGVGKTTLAR-IIANHTRAH--------FS-SLNAVLAGVKDLRAEVD----------------- 98 (726)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHH-HHHHHHCCC--------EE-EEECCCCCHHHHHHHHH-----------------
T ss_conf 9976999827888979999999999-998874886--------79-98562037799999999-----------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 878889999988766666675-420468847996164789999987545
Q gi|254780617|r 236 ASDPAPMQLLAPFAGCAMGEY-FRDNGYHALIAYDDLQKHAVAYRQLSL 283 (509)
Q Consensus 236 a~~~~~~r~~ap~~a~aiAEy-fr~~G~~VLi~~Ddltr~A~a~reisl 283 (509)
T Consensus 99 -----------------~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LL 130 (726)
T PRK13341 99 -----------------AAKERLERHGKRTILFIDEVHRFNKAQQDALL 130 (726)
T ss_pred -----------------HHHHHHHHCCCCEEEEEECHHHCCHHHHHHHH
T ss_conf -----------------99999874599659998625425887899878