HHsearch alignment for GI: 254780617 and conserved domain: TIGR00767

>TIGR00767 rho transcription termination factor Rho; InterPro: IPR004665 Members of this family have a related but highly variable long, highly charged insert near the amino end. The proteins differ in the specificity of RNA binding.; GO: 0003715 transcription termination factor activity, 0005524 ATP binding, 0006353 transcription termination.
Probab=99.73  E-value=2.2e-16  Score=138.07  Aligned_cols=303  Identities=18%  Similarity=0.237  Sum_probs=217.9

Q ss_pred             CCCCCCCCCEEEECCCEEEEECCHHH--HHCCCCHHHCCCCCCCCCCCCCCCHHCCCCC-CCCCCCCC----HHHHHCCH
Q ss_conf             86686789888977987886679469--8300030023144664445444100101357-73112660----01444160
Q gi|254780617|r   78 SYKEISEGDIVKRTGRIVDVPVGLEL--LGRVVDALGNPIDGKGPIKCEQRSCTEADAP-GIIQRQSV----CEPLSTGI  150 (509)
Q Consensus        78 ~~~gI~~G~~V~~tg~~~~vpvG~~l--LGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p-~~~~R~~i----~~~l~TGI  150 (509)
T Consensus        89 ~~~~~~~gd~~~g~~~~--p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~pl~p~~~~~~~~~~~~~~~~~~  161 (420)
T TIGR00767        89 RRFGLRTGDTVEGKIRS--PKEGEKYFALLKVES-----VNGDDPDKAKERPLFDNLTPLYPNERLKLERGNTDPEDLST  161 (420)
T ss_pred             HHHCCCCCCEEEEEECC--CCCCCHHHHHEEEEC-----CCCCCCHHHHHHCCCCCCCCCCCCHHHEECCCCCCCHHHHH
T ss_conf             65204457513311017--632211211001100-----26765012332023333454454102100146775114677


Q ss_pred             HHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             23310111156833655247788611589999999886302466787606999951677678999998511467421158
Q gi|254780617|r  151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSI  230 (509)
Q Consensus       151 ~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tv  230 (509)
T Consensus       162 ~~~~~~~p~g~g~~~l~~~pp~~g~~~~~~-~~~-----~~~~~~~p~~~l~~~l~d~~p~~~~~~~~~~~g~-------  228 (420)
T TIGR00767       162 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQ-KIA-----NAITRNHPEVELIVLLIDERPEEVTDLQRSVKGE-------  228 (420)
T ss_pred             HHHHHHHCCCCCCCEEEECCCCCCHHHHHH-HHH-----HHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHH-------
T ss_conf             888765103677530365177544268888-888-----7763268743799886336622567777764212-------


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99728878889999988766666675420468847996164789999987545303787543337520012467888875
Q gi|254780617|r  231 VVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA  310 (509)
Q Consensus       231 vv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~  310 (509)
T Consensus       229 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~p~~g~~l~-gg~~~~~~~~p~~~~g~~~  307 (420)
T TIGR00767       229 VVASTFDEPPSRHVQVAELVLEKAKRLVEHKKDVVILLDSITRLARAYNTVTPPSGKVLS-GGVDANALHRPKRFFGAAR  307 (420)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEE-CCCCHHHHCCCHHHHHHHC
T ss_conf             321001344101246889999988887632563477402356766654103666663221-5645012014145530010


Q ss_pred             HCCCCCCCCCEEEEEEEECCCC-CCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf             0454458873567531003676-644311466885406169961501221026654334441220343438988775567
Q gi|254780617|r  311 KMSDALGAGSLTALPVIETQVN-DVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGA  389 (509)
Q Consensus       311 ~~~~~~g~GSiT~~~~v~~~~~-D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~  389 (509)
T Consensus       308 ~---~~~gg~l~~~~~~~~~~g~~~d~~~~~~~~g~g~~~~~l~~~~~~~~~~p~~~~~~~g~~~~~~l~~~~~~~~~~~  384 (420)
T TIGR00767       308 N---IEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNLELHLDRKLADRRLFPAIDIKKSGTRKEELLLSPEELQKLWL  384 (420)
T ss_pred             C---CCCCCCEEEEEHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHH
T ss_conf             2---2466522221001231365101344443227775011100133321102210123456521232037788889999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             888799887678798
Q gi|254780617|r  390 VKGELAQYREMSSFS  404 (509)
Q Consensus       390 lr~~laqy~Ele~f~  404 (509)
T Consensus       385 ~~~~~~~~~~~~~~~  399 (420)
T TIGR00767       385 LRKVLSPLDDVEALE  399 (420)
T ss_pred             HHHHHCCCCHHHHHH
T ss_conf             988740445057899