HHsearch alignment for GI: 254780617 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.76 E-value=0.0023 Score=43.53 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=95.3
Q ss_pred CCCCCCCCCCHHHHHCCHHHHHCCCCCCCC-CEEE-EECCCCCCCHHHHHHHHHHHHHHCCCCCC---------CC---C
Q ss_conf 577311266001444160233101111568-3365-52477886115899999998863024667---------87---6
Q gi|254780617|r 133 APGIIQRQSVCEPLSTGIKAIDSLIPIGRG-QREL-IIGDRKTGKTSIILDTFLNQKSSHDKGSE---------KD---K 198 (509)
Q Consensus 133 ~p~~~~R~~i~~~l~TGI~~ID~l~pigrG-QR~~-I~g~~g~GKt~l~~~~I~nq~~~~~~~~~---------~~---~ 198 (509)
T Consensus 65 a~~vl~rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~-----~HqLAVnVQlP~flfydeeave~GGL~ 139 (333)
T TIGR02236 65 ADDVLERRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQI-----CHQLAVNVQLPEFLFYDEEAVEKGGLE 139 (333)
T ss_pred HHHHHHHHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHH-----HHHHHHHHCCCCHHHCCCHHHCCCCCC
T ss_conf 899999872075044486367656079600005888771007865787-----667655322871121011000147767
Q ss_pred C-EEEEEEC-----CCCHHHHHH-HHHH-------HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 0-6999951-----677678999-9985-------114674211589972887888999998876666667542046884
Q gi|254780617|r 199 V-YCIYVAI-----GQKRSSVAR-FVKA-------LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHA 264 (509)
Q Consensus 199 v-~~V~~~I-----Ger~~ev~~-~~~~-------l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~V 264 (509)
T Consensus 140 gp~av~IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~evL~nI~--vARAyNS-~HQmllve~~~~li~e~~~~~~pv 216 (333)
T TIGR02236 140 GPKAVYIDTENTFRPERIEQMAKGLARGTLQAAMELDPDEVLKNIY--VARAYNS-NHQMLLVEKAKELIKELKNEDKPV 216 (333)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEE--EEEEECC-HHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 8768998559798625799999863111366653278777720304--7785263-147999999999997301579946
Q ss_pred -EEEEECHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -7996164789999987545303787543
Q gi|254780617|r 265 -LIAYDDLQKHAVAYRQLSLLLRRPPGRE 292 (509)
Q Consensus 265 -Li~~Ddltr~A~a~reisl~~~~pp~~~ 292 (509)
T Consensus 217 ~L~~VDSLtsHFRa---------EY~GRg 236 (333)
T TIGR02236 217 RLLIVDSLTSHFRA---------EYVGRG 236 (333)
T ss_pred EEEEECCCCCCCCC---------CCCCHH
T ss_conf 89998121002236---------764502