>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=96.39 E-value=0.042 Score=34.37 Aligned_cols=173 Identities=22% Similarity=0.173 Sum_probs=85.5 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC----CCCCCEEEEEEECCCCCHH Q ss_conf 552477886115899999998863024667876069999516776789999985114----6742115899728878889 Q gi|254780617|r 166 LIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALED----RGALSYSIVVVASASDPAP 241 (509) Q Consensus 166 ~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~----~~~~~~tvvv~a~a~~~~~ 241 (509) T Consensus 16 QiYGp~G~GKTn~c~~~a~~a~~~G------k~v--~YiDT-EGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~--f~ 84 (223) T TIGR02237 16 QIYGPPGSGKTNICLILAVNAARQG------KKV--VYIDT-EGGLSPERFKQIAEDRALDPERVLSNVIVFEVFD--FD 84 (223) T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC------CCE--EEEEC-CCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCC--HH T ss_conf 9875899867899999999998618------958--99962-8983289999986305889888841535523535--67 Q ss_pred HHHHHHHHHHHHHHHHHCC-C-CCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9999887666666754204-6-8847996164789999987545303787543337520012467888875045445887 Q gi|254780617|r 242 MQLLAPFAGCAMGEYFRDN-G-YHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAG 319 (509) Q Consensus 242 ~r~~ap~~a~aiAEyfr~~-G-~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~G 319 (509) T Consensus 85 eQ~~a----i~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~-----nk~~~~~~~l~~Ql~~Ll~lArk~~~A---V 152 (223) T TIGR02237 85 EQEVA----IQKTSKLIDRDGDKADLVVVDSFTALYRLERSDDR-----NKQISLNRELARQLTLLLSLARKKDLA---V 152 (223) T ss_pred HHHHH----HHHHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHCCCC---E T ss_conf 89999----99999998606883314888153345420257860-----256799999999999999998764997---8 Q ss_pred CEEEEEEEECCCC---CCCCCHHHHHHHHHCCEEE-EECCHHHH-CCCCC Q ss_conf 3567531003676---6443114668854061699-61501221-02665 Q gi|254780617|r 320 SLTALPVIETQVN---DVSAYIPTNVISITDGQIF-LETELFYQ-GIRPA 364 (509) Q Consensus 320 SiT~~~~v~~~~~---D~~~~i~~~~~si~DG~i~-l~~~l~~~-g~~Pa 364 (509) T Consensus 153 viT-NQvy~d~~~gG~~~~~P~GG~~L~h~~K~i~rLE~--~~r~G~R~a 199 (223) T TIGR02237 153 VIT-NQVYTDVNNGGSETLRPLGGHLLEHWSKVILRLEK--LNRVGRRKA 199 (223) T ss_pred EEE-EEEEEEECCCCCCEEEECCCHHHHHHHCEEEEEEC--CCCCCCEEE T ss_conf 997-11588637797320100331134311021335644--789874245

HHsearch alignment for GI: 254780617 and conserved domain: TIGR02237