HHsearch alignment for GI: 254780617 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00 E-value=0 Score=1010.31 Aligned_cols=410 Identities=31% Similarity=0.474 Sum_probs=392.2
Q ss_pred EEEEEEEEEEECCEEEEECCCCCCCCCEEEECC-------CEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEE
Q ss_conf 010358999827589997588877374799579-------8189999205985999980586686789888977987886
Q gi|254780617|r 25 FSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSH-------GVYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDV 97 (509)
Q Consensus 25 ~~~~G~V~~V~~giv~v~GL~~a~~GElv~~~~-------g~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~v 97 (509)
T Consensus 3 ~~~~Grv~~v~G~Ll~A~-lP~a~vGELC~i~~nW~~~~~~~~AEVVGf~~~~alLsPlg~~~G~~~g~~V~p~g~~~~i 81 (430)
T TIGR02546 3 VRVRGRVTEVSGTLLKAV-LPGARVGELCLIKRNWPRDPSQLLAEVVGFTGDEALLSPLGELSGISPGSEVIPTGRPLSI 81 (430)
T ss_pred CEEEEEEEEECCEEEEEE-CCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCEEE
T ss_conf 314766775213389998-1760674034552237898566137899872786776026653325656678625842022
Q ss_pred ECCHHHHHCCCCHHHCCCCCCCCCCCCC-------CCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECC
Q ss_conf 6794698300030023144664445444-------100101357731126600144416023310111156833655247
Q gi|254780617|r 98 PVGLELLGRVVDALGNPIDGKGPIKCEQ-------RSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGD 170 (509)
Q Consensus 98 pvG~~lLGRVvD~lG~PlDg~g~i~~~~-------~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~ 170 (509)
T Consensus 82 ~vGe~LLGRVlDG~GrPlD~~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIFA~ 161 (430)
T TIGR02546 82 RVGEALLGRVLDGFGRPLDGKGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAG 161 (430)
T ss_pred EECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 10600032004565770378887875564302464576567810487675334651014667543440366530578708
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 78861158999999988630246678760699995167767899999851146742115899728878889999988766
Q gi|254780617|r 171 RKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAG 250 (509)
Q Consensus 171 ~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a 250 (509)
T Consensus 162 aG~GKSTL-L~~i~~g~---------~ADv~V~ALIGERGREVREFiE~~lg~e~~~RsVlVvsTSDrss~eR~~AAy~A 231 (430)
T TIGR02546 162 AGVGKSTL-LGMIARGA---------SADVNVIALIGERGREVREFIEHLLGEEGRKRSVLVVSTSDRSSLERLKAAYTA 231 (430)
T ss_pred CCCCHHHH-HHHHHCCC---------CCCEEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 88616689-99986189---------887899860278760478887520783052424899607986679999998788
Q ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECC
Q ss_conf 66667542046884799616478999998754530378754333752001246788887504544588735675310036
Q gi|254780617|r 251 CAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQ 330 (509)
Q Consensus 251 ~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~ 330 (509)
T Consensus 232 TaIAEYFRDQGk~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~~e~----GSITA~YTVLvE 307 (430)
T TIGR02546 232 TAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGNSEK----GSITALYTVLVE 307 (430)
T ss_pred HHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCC----CCEEEEEEEEEC
T ss_conf 7999999973990798840277999998778875378400257787366507501227861129----625345678762
Q ss_pred CCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf 766443114668854061699615012210266543344412203434389887755678887998876787987633--
Q gi|254780617|r 331 VNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSS-- 408 (509)
Q Consensus 331 ~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fgs-- 408 (509)
T Consensus 308 gDd~~dP~ADEvRSILDGHIvLsR~LA~~~HyPAIDVLaS~SRvm~~vv~~eH~~aA~~lR~LLA~Y~e~e~LI~lGEY~ 387 (430)
T TIGR02546 308 GDDMNDPIADEVRSILDGHIVLSRKLAERNHYPAIDVLASLSRVMSQVVSKEHRRAAGKLRRLLAKYKEVELLIRLGEYQ 387 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77799843665544542368998999741688635665236642367788789999999999999999998898744888
Q ss_pred -CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -89989999999999999996699988748899999999986
Q gi|254780617|r 409 -DLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIFAGI 449 (509)
Q Consensus 409 -dlD~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~ 449 (509)
T Consensus 388 ~G~D~~~D~A~~~~~~i~~FL~Q~~~E~~~~e~tl~~L~~~~ 429 (430)
T TIGR02546 388 PGSDPETDKAIDKIDAIRAFLRQSTDEKSSYEETLEQLHALV 429 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 998988999997577889871488877789899999999981