HHsearch alignment for GI: 254780617 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=90.10 E-value=0.18 Score=29.77 Aligned_cols=222 Identities=16% Similarity=0.193 Sum_probs=103.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC---CCCCCEEEEEEECCCC
Q ss_conf 8336552477886115899999998863024667876069999516776789999985114---6742115899728878
Q gi|254780617|r 162 GQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALED---RGALSYSIVVVASASD 238 (509)
Q Consensus 162 GQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~---~~~~~~tvvv~a~a~~ 238 (509)
T Consensus 21 G~PvHl~GPaG~GKT~LA~h-vA~~r--------~RPV~l~~G---d~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~d 88 (265)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMH-VARKR--------DRPVVLING---DAELTTSDLVGSYAGYTRKKVVDQFIHNVVKLED 88 (265)
T ss_pred CCCEEEECCCCCCHHHHHHH-HHHHC--------CCCEEEEEC---CCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCC
T ss_conf 88667447888556899999-99736--------896899865---8232654423154675222232012111342512
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88999998876666667542046884799616478999998754530378754333752001246788887504544588
Q gi|254780617|r 239 PAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGA 318 (509)
Q Consensus 239 ~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~ 318 (509)
T Consensus 89 ~~~~~W~D~rLt~Av~eG~-------TLVYdEF~Rs------------kP~~nN-------VLLSvlEE~vL~LPg~--- 139 (265)
T TIGR02640 89 IVRQNWVDNRLTLAVREGF-------TLVYDEFTRS------------KPETNN-------VLLSVLEEGVLELPGK--- 139 (265)
T ss_pred CCCCCCCCCHHHHHHHCCC-------EEEECCCCCC------------CCHHHH-------HHHHHHHHHHHCCCCC---
T ss_conf 2002667835789975697-------2766475788------------620456-------5675555232158887---
Q ss_pred CCEEEEEEEECCCCCCCCCHHHH--HHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 73567531003676644311466--8854061699615012210266543344412203434389887755678887998
Q gi|254780617|r 319 GSLTALPVIETQVNDVSAYIPTN--VISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQ 396 (509)
Q Consensus 319 GSiT~~~~v~~~~~D~~~~i~~~--~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laq 396 (509)
T Consensus 140 -~~~------------~~Yv~VhP~FR-----~IfTSNp~EYAGVh------------------~~QDALlDRL~ti~~D 183 (265)
T TIGR02640 140 -RGE------------SRYVDVHPEFR-----VIFTSNPVEYAGVH------------------ETQDALLDRLVTISMD 183 (265)
T ss_pred -CCC------------CCCEEECCCCC-----EEECCCCCCCCCCC------------------CHHHHHHHHHCCCCCC
T ss_conf -877------------87225788702-----46314870105767------------------7166776644004578
Q ss_pred HHHHHHHHHHH---CCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCHHH
Q ss_conf 87678798763---389-9899999999999999966999887488999-9999998669806679899
Q gi|254780617|r 397 YREMSSFSKFS---SDL-DSSTQKFLSKGERLTELLKQPQFSPLAMEEQ-VVMIFAGISGCLDEVAVSQ 460 (509)
Q Consensus 397 y~Ele~f~~fg---sdl-D~~t~~~l~rg~ri~e~LkQ~~~~p~~~~~q-v~~l~a~~~G~ld~i~v~~ 460 (509)
T Consensus 184 ~~D~~~e~ai~~~~t~~~~~~a~~IV~lv~~~R~a~g~e~~~Gl~~RA~lMiA~~at~~dipv~~d~~~ 252 (265)
T TIGR02640 184 YPDEDTETAILRAKTDVAEESAATIVRLVRELRLASGDEKTSGLSLRASLMIAEVATQEDIPVDVDDED 252 (265)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 544478999999860612467899999999984212553337436899999998754437986776025