HHsearch alignment for GI: 254780617 and conserved domain: TIGR02785
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=90.91 E-value=0.2 Score=29.43 Aligned_cols=245 Identities=16% Similarity=0.174 Sum_probs=109.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHH-HHCCCCCCCEEEEEEECCCC
Q ss_conf 56833655247788611589999999886302466787606999951677678999998-51146742115899728878
Q gi|254780617|r 160 GRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVK-ALEDRGALSYSIVVVASASD 238 (509)
Q Consensus 160 grGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~-~l~~~~~~~~tvvv~a~a~~ 238 (509)
T Consensus 12 ~~G~nILVsAsAGSGKTaVLVERii~~i~~gE~pvdiDrLL-VVTFTnaAA~EMK~Ri~~~l~k~--------l~~~~~d 82 (1295)
T TIGR02785 12 DRGQNILVSASAGSGKTAVLVERIIKKILRGENPVDIDRLL-VVTFTNAAAREMKERIEEALQKE--------LAQEPDD 82 (1295)
T ss_pred HCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCC
T ss_conf 36886476532266614789999999964788770202103-67888999999999999999997--------4368888
Q ss_pred CHHHHHHHHHHHHHHHHHHHCC---------------------CCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8899999887666666754204---------------------6884799616478999998754530378754333752
Q gi|254780617|r 239 PAPMQLLAPFAGCAMGEYFRDN---------------------GYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGD 297 (509)
Q Consensus 239 ~~~~r~~ap~~a~aiAEyfr~~---------------------G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~ 297 (509)
T Consensus 83 ~P~~~-----ta~~~~~hl~~QL~lL~~A~ISTlhsFCL~Vir~~YYllDlDP~FRil~nd~e~~LL~~E~--------- 148 (1295)
T TIGR02785 83 DPERR-----TAVDNSKHLRRQLALLNKANISTLHSFCLKVIRKHYYLLDLDPSFRILTNDTEELLLLKEV--------- 148 (1295)
T ss_pred CCHHH-----HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHH---------
T ss_conf 71232-----0443789999999644676510457899999766604355378876577567888988757---------
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEEEEE-EECCCC-CCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHH--
Q ss_conf 00124678888750454458873567531-003676-64431146688540616996150122102665433444122--
Q gi|254780617|r 298 VFYLHSRLLERAAKMSDALGAGSLTALPV-IETQVN-DVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSR-- 373 (509)
Q Consensus 298 vf~~~s~l~ERa~~~~~~~g~GSiT~~~~-v~~~~~-D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SR-- 373 (509)
T Consensus 149 ---~~d~~E~~y~~-~d------~~~F~~L~~~f~~rDR~D~~L~~li~--------~lY~F~~a~P~Pe~WL~~l~~~Y 210 (1295)
T TIGR02785 149 ---VDDVLEEEYYK-ED------NEAFFELVDNFSGRDRSDDGLRDLIL--------KLYDFARATPNPEKWLNKLAEAY 210 (1295)
T ss_pred ---HHHHHHHHHHH-CC------CHHHHHHHHHHHCCCCCCHHHHHHHH--------HHHHHHHCCCCHHHHHHHCCCCC
T ss_conf ---99999998520-15------15899999865078977012899999--------99999744998678886265542
Q ss_pred -CCCCCCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC--CCCCCCCHH
Q ss_conf -0343438988775567-----------88879988767879876338998999999999999999669--998874889
Q gi|254780617|r 374 -VGSAAQVKAMKQVSGA-----------VKGELAQYREMSSFSKFSSDLDSSTQKFLSKGERLTELLKQ--PQFSPLAME 439 (509)
Q Consensus 374 -v~~~~~~~~~~~~a~~-----------lr~~laqy~Ele~f~~fgsdlD~~t~~~l~rg~ri~e~LkQ--~~~~p~~~~ 439 (509)
T Consensus 211 ~V~~~~~~e-~~~~~~~ik~~~~~~~~~~~~~l~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (1295)
T TIGR02785 211 EVKEDFLIE-SKLLQQQIKDLLKNELEGLQEKLQKALEL--FMAEDGELAPKLENFQLEAQNIKELIEEKLAQEDWNELR 287 (1295)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 234046788-89999998999999999999999999986--543202663168999999999999999888543699999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254780617|r 440 EQVVMIFAG 448 (509)
Q Consensus 440 ~qv~~l~a~ 448 (509)
T Consensus 288 ~~~~~~~~~ 296 (1295)
T TIGR02785 288 EAVALVKFE 296 (1295)
T ss_pred HHHHHHHHH
T ss_conf 998640244