HHsearch alignment for GI: 254780617 and conserved domain: TIGR02858

>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=93.09  E-value=0.14  Score=30.63  Aligned_cols=152  Identities=24%  Similarity=0.246  Sum_probs=78.9

Q ss_pred             CHHHHHCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
Q ss_conf             602331011-1156833655247788611589999999886302-46678760699995167767899999851146742
Q gi|254780617|r  149 GIKAIDSLI-PIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHD-KGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGAL  226 (509)
Q Consensus       149 GI~~ID~l~-pigrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~-~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~  226 (509)
T Consensus       109 A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~S-tG~~~~~~~g~KV---givDER-SEIAgC~~GvPQ~~vG  183 (282)
T TIGR02858       109 ADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILS-TGISKLGLKGKKV---GIVDER-SEIAGCVNGVPQLDVG  183 (282)
T ss_pred             CHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCE---EEEECC-HHHHHHCCCCCCCCCC
T ss_conf             5666887730589446788886889885104888988860-7854246899746---998432-4656545882414467


Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHH------HHHH------------HHHHHHCCCC
Q ss_conf             115899728878889999988766666675420468847996164789------9999------------8754530378
Q gi|254780617|r  227 SYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKH------AVAY------------RQLSLLLRRP  288 (509)
Q Consensus       227 ~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~------A~a~------------reisl~~~~p  288 (509)
T Consensus       184 ~RtDVLD~C---PKAE-------GmMM~i--RSMSP~Vi-v~DEIGr~ED~~Al~eA~naGV~~I~TaHg~~~~Dl~kRP  250 (282)
T TIGR02858       184 IRTDVLDGC---PKAE-------GMMMLI--RSMSPDVI-VVDEIGREEDVEALLEALNAGVSVIATAHGRDLEDLKKRP  250 (282)
T ss_pred             CCEEECCCC---CHHH-------HHHHHH--HCCCCCEE-EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCH
T ss_conf             606751788---5378-------999999--70698579-9814889533899999861675688764048812665076


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             7543337520012467888875045445887356753
Q gi|254780617|r  289 PGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALP  325 (509)
Q Consensus       289 p~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~  325 (509)
T Consensus       251 ~fk~l-------~e~~~Fer~v~Ls~~~G~GTve~vy  280 (282)
T TIGR02858       251 VFKEL-------LEQKAFERYVVLSRRKGPGTVEAVY  280 (282)
T ss_pred             HHHHH-------HHHCCCEEEEEECCCCCCCEEEEEC
T ss_conf             67999-------9724314899836889883244531