HHsearch alignment for GI: 254780617 and conserved domain: TIGR03305
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=906.71 Aligned_cols=434 Identities=24% Similarity=0.368 Sum_probs=393.8
Q ss_pred EEEEEEECCEEEEECCCCC--CCCCEEEECC-C--EEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEEECCHHH
Q ss_conf 5899982758999758887--7374799579-8--189999205985999980586686789888977987886679469
Q gi|254780617|r 29 GRVLSIGDGIARVYGLNNI--RAGEMVQFSH-G--VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLEL 103 (509)
Q Consensus 29 G~V~~V~~giv~v~GL~~a--~~GElv~~~~-g--~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~vpvG~~l 103 (509)
T Consensus 1 G~V~~V~G~VVdv~f-~~~~p~i~~~l~~~~~~~~~~ev~~~l~~~~V~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRF-DGELPAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CEEEEEECCEEEEEE-CCCCCCHHCEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCEEEECCCCC
T ss_conf 969999764799990-6877502018895799959998701227988999990487788899999928995488717210
Q ss_pred HHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 83000300231446644454441001013577311266001444160233101111568336552477886115899999
Q gi|254780617|r 104 LGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTF 183 (509)
Q Consensus 104 LGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I 183 (509)
T Consensus 80 LGRV~d~lG~PiDg~g~i~~~~~~~i~~~~p~~~~R~~~~e~l~TGIkaID~l~pigrGqr~gIfggaGvGKT~Ll~e~i 159 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI 159 (449)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEHHHCCCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 67888056654678999887641323578998555677786400284402302452457565665279998410189999
Q ss_pred HHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-CCCC
Q ss_conf 998863024667876069999516776789999985114674211589972887888999998876666667542-0468
Q gi|254780617|r 184 LNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFR-DNGY 262 (509)
Q Consensus 184 ~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr-~~G~ 262 (509)
T Consensus 160 ~n~~~~~-------~~v~V~~~IGER~rE~~e~~~el~~~g~l~~tv~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~ 232 (449)
T TIGR03305 160 HNMVGQH-------QGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQ 232 (449)
T ss_pred HHHHHHC-------CCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8656414-------886899997452167999999987536654269998369898799999999877699998861798
Q ss_pred CEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHH
Q ss_conf 84799616478999998754530378754333752001246788887504544588735675310036766443114668
Q gi|254780617|r 263 HALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNV 342 (509)
Q Consensus 263 ~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~ 342 (509)
T Consensus 233 dVLl~~D~ltr~a~A~rEvsl~lg~~P~~~GYpp~vf~~l~~L~ER~~~~~----~GSITa~~~V~~~~dD~tdPi~~~~ 308 (449)
T TIGR03305 233 DVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTS----DGAITSIQAVYVPADDFTDPAAVHT 308 (449)
T ss_pred CEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC----CCCEEEEEEEECCCCCCCCCHHHHH
T ss_conf 089999676899999989998638999877879719999899998524899----9866788789713887667555543
Q ss_pred HHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-CCCCHHHHHHHH
Q ss_conf 85406169961501221026654334441220343-43898877556788879988767879876-3-389989999999
Q gi|254780617|r 343 ISITDGQIFLETELFYQGIRPAINIGLSVSRVGSA-AQVKAMKQVSGAVKGELAQYREMSSFSKF-S-SDLDSSTQKFLS 419 (509)
Q Consensus 343 ~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~-~~~~~~~~~a~~lr~~laqy~Ele~f~~f-g-sdlD~~t~~~l~ 419 (509)
T Consensus 309 ~silDg~ivLsr~la~~G~yPAId~l~S~SRv~~~~iv~~~H~~va~~~~~~la~y~el~diiai~G~~eL~~~dk~~v~ 388 (449)
T TIGR03305 309 FSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVN 388 (449)
T ss_pred EEECCCEEEEEHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 10127027870768967999971776335534881006799999999999999988999999987485106999999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999966999887488999999999866980667989999999999999974159999988
Q gi|254780617|r 420 KGERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILEDI 483 (509)
Q Consensus 420 rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~~~G~ld~i~v~~I~~fe~~l~~~l~~~~~ei~~~I 483 (509)
T Consensus 389 ra~rl~~fL~Qpf~v--------ae~ftg~~G~~v~l~-~t~~~~~~il~g~~d~~~e~~~~~~ 443 (449)
T TIGR03305 389 RARRLERFLTQPFFT--------TEQFTGMKGKTVSLE-DALDGCERILNDEFQDYPERDLYMI 443 (449)
T ss_pred HHHHHHHHHCCCCCH--------HHHHCCCCCEEECHH-HHHHHHHHHHCCCCCCCCHHHHHCC
T ss_conf 999999985798511--------232259895186199-9999999984898677998997146