HHsearch alignment for GI: 254780617 and conserved domain: TIGR03496
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=915.75 Aligned_cols=404 Identities=30% Similarity=0.453 Sum_probs=386.0
Q ss_pred EEEEEEECCEEEEECCCCCCCCCEEEEC--CC--EEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEEECCHHHH
Q ss_conf 5899982758999758887737479957--98--1899992059859999805866867898889779878866794698
Q gi|254780617|r 29 GRVLSIGDGIARVYGLNNIRAGEMVQFS--HG--VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELL 104 (509)
Q Consensus 29 G~V~~V~~giv~v~GL~~a~~GElv~~~--~g--~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~vpvG~~lL 104 (509)
T Consensus 1 GrV~~V~G~vIea~g~-~~~IGe~c~I~~~~g~~i~aEVVgf~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~v~vg~~lL 79 (411)
T TIGR03496 1 GRLTRVVGLVLEAVGL-RAPVGSRCEIESADGDPIEAEVVGFSGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLL 79 (411)
T ss_pred CEEEEEEEEEEEEECC-CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHC
T ss_conf 9799998018999737-999788899993899789999999729979999866887888899999789966676387653
Q ss_pred HCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 30003002314466444544410010135773112660014441602331011115683365524778861158999999
Q gi|254780617|r 105 GRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFL 184 (509)
Q Consensus 105 GRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~I~ 184 (509)
T Consensus 80 GRVid~lG~PlDg~~~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pig~GQR~gIf~g~GvGKs~L-l~~ia 158 (411)
T TIGR03496 80 GRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRIGIFAGSGVGKSVL-LGMMA 158 (411)
T ss_pred CCEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHH-HHHHH
T ss_conf 78857888765777888878456500799681431787762115834663446614686313227999867799-99997
Q ss_pred HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 98863024667876069999516776789999985114674211589972887888999998876666667542046884
Q gi|254780617|r 185 NQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHA 264 (509)
Q Consensus 185 nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~V 264 (509)
T Consensus 159 ~~~~---------adv~VialIGeR~rev~efie~~~~~~~~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~V 229 (411)
T TIGR03496 159 RYTE---------ADVVVVGLIGERGREVKEFIEEILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDV 229 (411)
T ss_pred HCCC---------CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 5348---------9889995325305899999998622256521699994388998999999999999999999669946
Q ss_pred EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 79961647899999875453037875433375200124678888750454458873567531003676644311466885
Q gi|254780617|r 265 LIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVIS 344 (509)
Q Consensus 265 Li~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~s 344 (509)
T Consensus 230 Ll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~--~~GSIT~~~~V~~~~dD~~dpi~d~~~~ 307 (411)
T TIGR03496 230 LLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNGEE--GKGSITAFYTVLVEGDDQQDPIADAARA 307 (411)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCEEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 99974688999999899987379998667885388887788874368999--8986877358975798756645776565
Q ss_pred HHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHH
Q ss_conf 406169961501221026654334441220343438988775567888799887678798763---38998999999999
Q gi|254780617|r 345 ITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFS---SDLDSSTQKFLSKG 421 (509)
Q Consensus 345 i~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fg---sdlD~~t~~~l~rg 421 (509)
T Consensus 308 ilDG~ivLsr~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~~~li~~g~y~~g~d~~~d~ai~~~ 387 (411)
T TIGR03496 308 ILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSPEHLQLARRFKQLLSRYQENRDLISIGAYQPGSDPELDQAIALY 387 (411)
T ss_pred HEEEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 14048999398996799997186405644233216899999999999999998999999997472369998999999979
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999669998874889999999
Q gi|254780617|r 422 ERLTELLKQPQFSPLAMEEQVVMI 445 (509)
Q Consensus 422 ~ri~e~LkQ~~~~p~~~~~qv~~l 445 (509)
T Consensus 388 ~~i~~fL~Q~~~e~~~~~~~~~~l 411 (411)
T TIGR03496 388 PRIEAFLQQGMRERASFEESLEAL 411 (411)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 999997289999997999999649