HHsearch alignment for GI: 254780617 and conserved domain: TIGR03498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=908.04 Aligned_cols=408 Identities=28% Similarity=0.443 Sum_probs=388.4
Q ss_pred EEEEEEECCEEEEECCCC-CCCCCEEEECC--C--EEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCEEEEECCHHH
Q ss_conf 589998275899975888-77374799579--8--189999205985999980586686789888977987886679469
Q gi|254780617|r 29 GRVLSIGDGIARVYGLNN-IRAGEMVQFSH--G--VYGMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLEL 103 (509)
Q Consensus 29 G~V~~V~~giv~v~GL~~-a~~GElv~~~~--g--~~G~Vi~l~~d~v~i~~l~~~~gI~~G~~V~~tg~~~~vpvG~~l 103 (509)
T Consensus 1 GrV~~I~G~viev~g~~~~~~iGe~c~I~~~~g~~~~aEVvg~~~~~v~l~~~~~t~Gi~~G~~V~~tg~~~~v~vg~~l 80 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80 (418)
T ss_pred CEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCHHH
T ss_conf 98999978399998156667768889999199988999999981998999990798898999999968997488817422
Q ss_pred HHCCCCHHHCCCCCCCCCCC-CCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 83000300231446644454-44100101357731126600144416023310111156833655247788611589999
Q gi|254780617|r 104 LGRVVDALGNPIDGKGPIKC-EQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDT 182 (509)
Q Consensus 104 LGRVvD~lG~PlDg~g~i~~-~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~GKt~l~~~~ 182 (509)
T Consensus 81 LGRVid~~G~PlDg~g~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pig~GQRigIfgg~GvGKt~L-l~~ 159 (418)
T TIGR03498 81 LGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRKRVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL-LSM 159 (418)
T ss_pred CCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHH-HHH
T ss_conf 0517544676357899987775687651689982210688874315760212015502576641137899988899-999
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99988630246678760699995167767899999851146742115899728878889999988766666675420468
Q gi|254780617|r 183 FLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGY 262 (509)
Q Consensus 183 I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~ 262 (509)
T Consensus 160 i~~~~~---------adv~V~aliGeRgrEv~efi~~~~~~~~l~~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~ 230 (418)
T TIGR03498 160 LARNTD---------ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGK 230 (418)
T ss_pred HHHHCC---------CCEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 987507---------98689988302689999999986531564426999944889878888888787789999986798
Q ss_pred CEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHH
Q ss_conf 84799616478999998754530378754333752001246788887504544588735675310036766443114668
Q gi|254780617|r 263 HALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNV 342 (509)
Q Consensus 263 ~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~ 342 (509)
T Consensus 231 ~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~--~~GSIT~~~~v~~~~dD~~dpi~d~~ 308 (418)
T TIGR03498 231 DVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAE--GKGSITGIFTVLVDGDDHNEPVADAV 308 (418)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEECCCCCCCCCCHHHH
T ss_conf 3899955725889999999986589998677884177772687865136899--98569999999633888677617777
Q ss_pred HHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
Q ss_conf 854061699615012210266543344412203434389887755678887998876787987633---89989999999
Q gi|254780617|r 343 ISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSS---DLDSSTQKFLS 419 (509)
Q Consensus 343 ~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fgs---dlD~~t~~~l~ 419 (509)
T Consensus 309 ~~i~Dg~ivLsr~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~g~d~~~d~ai~ 388 (418)
T TIGR03498 309 RGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIR 388 (418)
T ss_pred HHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 67626389984889867999970885266444854356999999999999999889999999974866799988999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999669998874889999999998
Q gi|254780617|r 420 KGERLTELLKQPQFSPLAMEEQVVMIFAG 448 (509)
Q Consensus 420 rg~ri~e~LkQ~~~~p~~~~~qv~~l~a~ 448 (509)
T Consensus 389 ~~~~i~~fL~Q~~~e~~~~~~~~~~l~~i 417 (418)
T TIGR03498 389 LVPKIYEFLTQGPDEPTSLQDPFADLAAI 417 (418)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 79999997089998998999999999976