HHsearch alignment for GI: 254780617 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.41 E-value=0.19 Score=29.62 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=34.5
Q ss_pred HHHCCHHHHHCCCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 44416023310111-15683365524778861158999999988
Q gi|254780617|r 145 PLSTGIKAIDSLIP-IGRGQRELIIGDRKTGKTSIILDTFLNQK 187 (509)
Q Consensus 145 ~l~TGI~~ID~l~p-igrGQR~~I~g~~g~GKt~l~~~~I~nq~ 187 (509)
T Consensus 176 Gi~TG~~~LD~~~~Gl~~g~LiIiaARPsmGKTafalnia~n~A 219 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVA 219 (421)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 78788078999836999886899985467874599999999999