HHsearch alignment for GI: 254780617 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.78 E-value=0.00043 Score=48.81 Aligned_cols=123 Identities=23% Similarity=0.289 Sum_probs=69.5
Q ss_pred HHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC---HHHHHHHHHH-
Q ss_conf 4416023310111--156833655247788611589999999886302466787606999951677---6789999985-
Q gi|254780617|r 146 LSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQK---RSSVARFVKA- 219 (509)
Q Consensus 146 l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer---~~ev~~~~~~- 219 (509)
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g--~~~~vvyIdt-E~~f~~~Rl~qia~~~ 77 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGG--LEGKAVYIDT-EGTFRPERLVQIAERF 77 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEC-CCCCCHHHHHHHHHHH
T ss_conf 988857899650799647879999999998499999999999842475367--8962999953-6775889999999971
Q ss_pred -HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHH
Q ss_conf -1146742115899728878889999988766666675420468847996164789999
Q gi|254780617|r 220 -LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVA 277 (509)
Q Consensus 220 -l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a 277 (509)
T Consensus 78 ~~~~~~~l~~i~~~~~~~~~-~l~~~l-----~~l~~~l~~~~~v~LvVIDSia~l~r~ 130 (235)
T cd01123 78 GLDPEEVLDNIYVARAYNSD-HQLQLL-----EELEAILIESSRIKLVIVDSVTALFRA 130 (235)
T ss_pred CCCHHHHHCCEEEECCCCHH-HHHHHH-----HHHHHHHHCCCCCEEEEEEECHHHHHH
T ss_conf 34724542254796379999-999999-----999998730377239999610455566