HHsearch alignment for GI: 254780617 and conserved domain: cd01123

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.78  E-value=0.00043  Score=48.81  Aligned_cols=123  Identities=23%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             HHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC---HHHHHHHHHH-
Q ss_conf             4416023310111--156833655247788611589999999886302466787606999951677---6789999985-
Q gi|254780617|r  146 LSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQK---RSSVARFVKA-  219 (509)
Q Consensus       146 l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer---~~ev~~~~~~-  219 (509)
T Consensus         1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g--~~~~vvyIdt-E~~f~~~Rl~qia~~~   77 (235)
T cd01123           1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGG--LEGKAVYIDT-EGTFRPERLVQIAERF   77 (235)
T ss_pred             CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEC-CCCCCHHHHHHHHHHH
T ss_conf             988857899650799647879999999998499999999999842475367--8962999953-6775889999999971


Q ss_pred             -HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHH
Q ss_conf             -1146742115899728878889999988766666675420468847996164789999
Q gi|254780617|r  220 -LEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVA  277 (509)
Q Consensus       220 -l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a  277 (509)
T Consensus        78 ~~~~~~~l~~i~~~~~~~~~-~l~~~l-----~~l~~~l~~~~~v~LvVIDSia~l~r~  130 (235)
T cd01123          78 GLDPEEVLDNIYVARAYNSD-HQLQLL-----EELEAILIESSRIKLVIVDSVTALFRA  130 (235)
T ss_pred             CCCHHHHHCCEEEECCCCHH-HHHHHH-----HHHHHHHHCCCCCEEEEEEECHHHHHH
T ss_conf             34724542254796379999-999999-----999998730377239999610455566