HHsearch alignment for GI: 254780617 and conserved domain: cd01136
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=0 Score=797.26 Aligned_cols=323 Identities=33% Similarity=0.522 Sum_probs=311.8
Q ss_pred EEEEECCHHHHHCCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 78866794698300030023144664445444100101357731126600144416023310111156833655247788
Q gi|254780617|r 94 IVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKT 173 (509)
Q Consensus 94 ~~~vpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGI~~ID~l~pigrGQR~~I~g~~g~ 173 (509)
T Consensus 1 Pl~vpVg~~lLGRVid~~G~PiDg~~~i~~~~~~pi~~~ap~~~~R~~v~e~l~TGI~~ID~l~pigrGQR~~Ifg~~g~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCC
T ss_conf 96535576651747678834157999999986152568995803307888751157704200266247987874369999
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 61158999999988630246678760699995167767899999851146742115899728878889999988766666
Q gi|254780617|r 174 GKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAM 253 (509)
Q Consensus 174 GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~~r~~ap~~a~ai 253 (509)
T Consensus 81 GKt~L-l~~i~~~~~---------~~v~V~~~IGer~rev~e~~~~~~~~~~l~~tvvv~atad~~~~~r~~a~~~a~~~ 150 (326)
T cd01136 81 GKSTL-LGMIARGTT---------ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAI 150 (326)
T ss_pred CCCHH-HHHHHHCCC---------CCEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 84667-876864146---------77599996053388999999986245653222899606889989999988877777
Q ss_pred HHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 67542046884799616478999998754530378754333752001246788887504544588735675310036766
Q gi|254780617|r 254 GEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVND 333 (509)
Q Consensus 254 AEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D 333 (509)
T Consensus 151 AEyfrd~G~dVL~~~Dsltr~A~A~rEisl~~g~~P~~~gyp~~~f~~~~~l~ERag~~~----~GSIT~i~~v~~~~dd 226 (326)
T cd01136 151 AEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSD----KGSITAFYTVLVEGDD 226 (326)
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEECCCCC
T ss_conf 889997587337875246899999999888648998756677668888789888641799----9852444578705988
Q ss_pred CCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
Q ss_conf 443114668854061699615012210266543344412203434389887755678887998876787987633---89
Q gi|254780617|r 334 VSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSS---DL 410 (509)
Q Consensus 334 ~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~~~S~SRv~~~~~~~~~~~~a~~lr~~laqy~Ele~f~~fgs---dl 410 (509)
T Consensus 227 ~tdpi~~~~~~i~Dg~ivLsr~La~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~ 306 (326)
T cd01136 227 LNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKKGS 306 (326)
T ss_pred CCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78862788987547389985889967999974886275336600067999999999999999899999999854976798
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 98999999999999999669
Q gi|254780617|r 411 DSSTQKFLSKGERLTELLKQ 430 (509)
Q Consensus 411 D~~t~~~l~rg~ri~e~LkQ 430 (509)
T Consensus 307 d~~~d~~i~~~~~i~~fL~Q 326 (326)
T cd01136 307 DPEVDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred CHHHHHHHHHHHHHHHHHCC
T ss_conf 98999999989999998586