HHsearch alignment for GI: 254780617 and conserved domain: cd03226
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.36 E-value=0.14 Score=30.63 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHH-CCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 02331-011115683365524778861158999999
Q gi|254780617|r 150 IKAID-SLIPIGRGQRELIIGDRKTGKTSIILDTFL 184 (509)
Q Consensus 150 I~~ID-~l~pigrGQR~~I~g~~g~GKt~l~~~~I~ 184 (509)
T Consensus 13 ~~vL~~vsl~i~~Gei~~iiG~nGaGKSTLl-~~i~ 47 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLA-KILA 47 (205)
T ss_pred CEEEEEEEEEECCCCEEEEECCCCCCHHHHH-HHHH
T ss_conf 9786403788869989999889999899999-9995