HHsearch alignment for GI: 254780617 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.06 Score=33.21 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=23.9
Q ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 011115683365524778861158999999
Q gi|254780617|r 155 SLIPIGRGQRELIIGDRKTGKTSIILDTFL 184 (509)
Q Consensus 155 ~l~pigrGQR~~I~g~~g~GKt~l~~~~I~ 184 (509)
T Consensus 21 inl~i~~Ge~i~IvG~sGsGKSTLl-~ll~ 49 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLV-NLIP 49 (234)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHH-HHHH
T ss_conf 0899879999999989998299999-9996