HHsearch alignment for GI: 254780617 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.53 E-value=0.09 Score=31.92 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=25.5
Q ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 011115683365524778861158999999
Q gi|254780617|r 155 SLIPIGRGQRELIIGDRKTGKTSIILDTFL 184 (509)
Q Consensus 155 ~l~pigrGQR~~I~g~~g~GKt~l~~~~I~ 184 (509)
T Consensus 14 Vsl~i~~Ge~~aIvG~nGsGKSTL~~~~l~ 43 (226)
T cd03270 14 VDVDIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 489985998999987899609898361663