HHsearch alignment for GI: 254780617 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.10 E-value=0.004 Score=41.75 Aligned_cols=109 Identities=19% Similarity=0.315 Sum_probs=71.7
Q ss_pred HHHHCCHHHHHCCCC---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 144416023310111---15683365524778861158999999988630246678760699995167767899999851
Q gi|254780617|r 144 EPLSTGIKAIDSLIP---IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL 220 (509)
Q Consensus 144 ~~l~TGI~~ID~l~p---igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l 220 (509)
T Consensus 31 ~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~a--Qk------~gg~~~~iD~-E~a~d-~~~a~~l 100 (322)
T pfam00154 31 EVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEA--QK------AGGTAAFIDA-EHALD-PVYAKKL 100 (322)
T ss_pred CEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HH------CCCEEEEEEH-HHHCC-HHHHHHC
T ss_conf 4461580899998758997787089998898777899999999999--73------4993899853-66059-8899980
Q ss_pred CCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
Q ss_conf 14674-21158997288788899999887666666754204688479961647899
Q gi|254780617|r 221 EDRGA-LSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHA 275 (509)
Q Consensus 221 ~~~~~-~~~tvvv~a~a~~~~~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A 275 (509)
T Consensus 101 ---GVD~~~--l~~~qpd--~~Eq------al~i~~~li~~~~~~liViDSvaal~ 143 (322)
T pfam00154 101 ---GVDIDN--LLVSQPD--TGEQ------ALEIADMLVRSGAVDLIVVDSVAALV 143 (322)
T ss_pred ---CCCHHH--EEEECCC--HHHH------HHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf ---988025--3897788--3999------99999998537997659982534567