HHsearch alignment for GI: 254780617 and conserved domain: pfam04665
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=93.08 E-value=0.72 Score=25.37 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHH
Q ss_conf 83365524778861158999999988630246678760699995167767899999851146742115899728878889
Q gi|254780617|r 162 GQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPAP 241 (509)
Q Consensus 162 GQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~~ 241 (509)
T Consensus 13 pFrmaivGgSGSGKT~yLlsLf~tlv~ky---------khIfLfTpv~N~~Yd~YV--------wPdHV~~vtt~ee--- 72 (241)
T pfam04665 13 PFRMAIVGGSGSGKTTYLLSLLRTLVRKF---------KHIFLFTPVYNNAYDGYV--------WPDHIFKVTTNEE--- 72 (241)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH---------EEEEEECCCCCCCCCCCC--------CCCCEEEECCHHH---
T ss_conf 73599981588756699999999997741---------589996244673236525--------7773256257235---
Q ss_pred HHHHHHHHHHHHHHHHH--CCCC----CEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99998876666667542--0468----84799616478999998754530378754333752001246788887504544
Q gi|254780617|r 242 MQLLAPFAGCAMGEYFR--DNGY----HALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDA 315 (509)
Q Consensus 242 ~r~~ap~~a~aiAEyfr--~~G~----~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~ 315 (509)
T Consensus 73 leY~L~-~~k~kIek~~~~~~~~k~~~~fLiIlDD~Gd~q~rs~~L~~f~N~--gRH~n~Sii~-----Lcqty~Hv-p~ 143 (241)
T pfam04665 73 LEYALS-KTKEKIEKFSKKASNQKENFRFLIILDDLGDMQTRSKTLLNFTNH--GRHLNISIIL-----LCQTYKHV-PV 143 (241)
T ss_pred HHHHHH-HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC--CCCHHHEEEE-----EEEEEECC-CC
T ss_conf 778999-999999999986026664104899962555323311577766401--6101011134-----44221104-99
Q ss_pred CCCCCEEEEEEEECCCCCC
Q ss_conf 5887356753100367664
Q gi|254780617|r 316 LGAGSLTALPVIETQVNDV 334 (509)
Q Consensus 316 ~g~GSiT~~~~v~~~~~D~ 334 (509)
T Consensus 144 n~R~Sith~cccNvs~sD~ 162 (241)
T pfam04665 144 NGRDSITHFCCCNVSDSDL 162 (241)
T ss_pred CCCCCCEEEEEECCCHHHH
T ss_conf 8743204899831546668