HHsearch alignment for GI: 254780617 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.

Probab=94.06  E-value=0.13  Score=30.66  Aligned_cols=28  Identities=7%  Similarity=0.156  Sum_probs=19.1

Q ss_pred             HHHHHCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf             6754204688479961647899999875
Q gi|254780617|r  254 GEYFRDNGYHALIAYDDLQKHAVAYRQL  281 (509)
Q Consensus       254 AEyfr~~G~~VLi~~Ddltr~A~a~rei  281 (509)
T Consensus        93 ~~~l~~~~~~~ILFIDEIHr~nK~qqd~  120 (234)
T pfam05496        93 AAILTNLEPGDVLFIDEIHRLNRAVEEI  120 (234)
T ss_pred             HHHHHHCCCCCEEEEECHHHCCHHHHHH
T ss_conf             9999845899889996654358768874