HHsearch alignment for GI: 254780617 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=98.53 E-value=1.4e-06 Score=66.92 Aligned_cols=189 Identities=20% Similarity=0.172 Sum_probs=104.0
Q ss_pred HHCCHHHHHCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH---
Q ss_conf 4416023310111--15683365524778861158999999988630246678760699995167767899999851---
Q gi|254780617|r 146 LSTGIKAIDSLIP--IGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKAL--- 220 (509)
Q Consensus 146 l~TGI~~ID~l~p--igrGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l--- 220 (509)
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~-------ge~~lYis~ee~~~~l~~~~~~~g~~ 73 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEY-------GEPGVYVTLEEPPEDLRENAKSFGWD 73 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-------CCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 98895568863169982996999985897259999999999999865-------89689998137999999999982998
Q ss_pred ----CCCCCCCEEEEEEECCCCCHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ----1467421158997288788899999----88766666675420468847996164789999987545303787543
Q gi|254780617|r 221 ----EDRGALSYSIVVVASASDPAPMQLL----APFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGRE 292 (509)
Q Consensus 221 ----~~~~~~~~tvvv~a~a~~~~~~r~~----ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~ 292 (509)
T Consensus 74 ~~~~~~~g~---l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~---------~-- 138 (231)
T pfam06745 74 LEKLEEEGK---LAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKP---------A-- 138 (231)
T ss_pred HHHHHHCCC---EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCH---------H--
T ss_conf 589864696---789862544222100112279999999999999971998-8999764164005889---------9--
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEECCHHHHCCCCCCCC
Q ss_conf 337520012467888875045445887356753100367664431146688540616996150122102665433
Q gi|254780617|r 293 AYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINI 367 (509)
Q Consensus 293 gyp~~vf~~~s~l~ERa~~~~~~~g~GSiT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~~l~~~g~~Paid~ 367 (509)
T Consensus 139 ----~~r~~l~~l~~~lk---~~----g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I 202 (231)
T pfam06745 139 ----MAREILRRLKRVLK---KL----GVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEI 202 (231)
T ss_pred ----HHHHHHHHHHHHHH---HC----CCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEE
T ss_conf ----99999999999999---76----991999982125777656763011100369999988249989999999