HHsearch alignment for GI: 254780617 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.82 E-value=0.00017 Score=51.65 Aligned_cols=146 Identities=18% Similarity=0.098 Sum_probs=83.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH
Q ss_conf 68336552477886115899999998863024667876069999516776789999985114674211589972887888
Q gi|254780617|r 161 RGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240 (509)
Q Consensus 161 rGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~ 240 (509)
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la-~~~~~~~-------~~v~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~ 60 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALA-RELGPPG-------GGVIYIDGE-DILEEVLDQLL-----------LIIVGGKKAS 60 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HHHCCCC-------CCEEEEEHH-HHHHHHHHHHH-----------HHHHCCCCCC
T ss_conf 99789999999702999999999-8726689-------968998759-98988898765-----------3000112210
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999887666666754204688479961647899999875453037875433375200124678888750454458873
Q gi|254780617|r 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGS 320 (509)
Q Consensus 241 ~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GS 320 (509)
T Consensus 61 ~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~------------------~~~~--~~~---~~ 113 (148)
T smart00382 61 GSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE------------------LRLL--LLL---KS 113 (148)
T ss_pred CCHHHHHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH------------------HHHH--CCC---CC
T ss_conf 519999999999998449----98999827502147620799999999------------------9985--176---57
Q ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEC
Q ss_conf 5675310036766443114668854061699615
Q gi|254780617|r 321 LTALPVIETQVNDVSAYIPTNVISITDGQIFLET 354 (509)
Q Consensus 321 iT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~ 354 (509)
T Consensus 114 ~~~~~vi~~~n~-~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 114 EKNLTVILTTND-EKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred CCCEEEEEEECC-CCCCCHHHHCCCCCEEEEEEC
T ss_conf 899899995699-522498770744787999828