HHsearch alignment for GI: 254780617 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.82  E-value=0.00017  Score=51.65  Aligned_cols=146  Identities=18%  Similarity=0.098  Sum_probs=83.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH
Q ss_conf             68336552477886115899999998863024667876069999516776789999985114674211589972887888
Q gi|254780617|r  161 RGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA  240 (509)
Q Consensus       161 rGQR~~I~g~~g~GKt~l~~~~I~nq~~~~~~~~~~~~v~~V~~~IGer~~ev~~~~~~l~~~~~~~~tvvv~a~a~~~~  240 (509)
T Consensus         1 ~~~~ill~G~~GsGKTtl~~~la-~~~~~~~-------~~v~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~   60 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALA-RELGPPG-------GGVIYIDGE-DILEEVLDQLL-----------LIIVGGKKAS   60 (148)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HHHCCCC-------CCEEEEEHH-HHHHHHHHHHH-----------HHHHCCCCCC
T ss_conf             99789999999702999999999-8726689-------968998759-98988898765-----------3000112210


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999887666666754204688479961647899999875453037875433375200124678888750454458873
Q gi|254780617|r  241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGS  320 (509)
Q Consensus       241 ~~r~~ap~~a~aiAEyfr~~G~~VLi~~Ddltr~A~a~reisl~~~~pp~~~gyp~~vf~~~s~l~ERa~~~~~~~g~GS  320 (509)
T Consensus        61 ~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~------------------~~~~--~~~---~~  113 (148)
T smart00382       61 GSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE------------------LRLL--LLL---KS  113 (148)
T ss_pred             CCHHHHHHHHHHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH------------------HHHH--CCC---CC
T ss_conf             519999999999998449----98999827502147620799999999------------------9985--176---57


Q ss_pred             EEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEC
Q ss_conf             5675310036766443114668854061699615
Q gi|254780617|r  321 LTALPVIETQVNDVSAYIPTNVISITDGQIFLET  354 (509)
Q Consensus       321 iT~~~~v~~~~~D~~~~i~~~~~si~DG~i~l~~  354 (509)
T Consensus       114 ~~~~~vi~~~n~-~~~~~~~~~~~~~~~~~~~~~  146 (148)
T smart00382      114 EKNLTVILTTND-EKDLGPALLRRRFDRRIVLLL  146 (148)
T ss_pred             CCCEEEEEEECC-CCCCCHHHHCCCCCEEEEEEC
T ss_conf             899899995699-522498770744787999828